PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009879-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 607aa MW: 66154.2 Da PI: 6.4144

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009879-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.6e-09	493	541	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lvd+v+++G g+W+ I r +Rt ++k++w+++l AUR62009879-RA 493 AWSLTEVTKLVDGVAMFGAGRWSEIKRLSFssyAHRTSVDLKDKWRNLL 541 7*************************999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MKMVVGIKGN EEGVVEDGAA VKLSSGLAPL KQEADPIVYK LVRVDFDGRF VPATDDELME 60 VEDLLELEKS DMLSIPDAVE TVAHIADKDE LDESFEKPDL EKHEGLSEIK LTKIDEENLR 120 APAEDSLPKS ASSSKDRLVE GSVNNGEESS SSPHDGLNKN GSSGSKPDFS LIKGEIDLDK 180 LTTKELHETF RATFGRRTSV KDKMWLKRRI AMGLTNSCDV TVTSFIINDG KLLKKEELGK 240 NMDCGNSVAG EVCSAGNDEP VNLVAPNVRE DTLDVELGNS FTESGCRSDD HLDHRAAKRA 300 RKPTKRYIEE SSDTEKDFGG KSISPSKHFG QDKASCKEAV KPACGVHSGD FITRPDSIGG 360 SGVQVPYVSR IRRCRPRKSI MALTKFNSSD GALNRKTVES SAAVSKPQPD YHSRAKLVET 420 KPIPFEEPIA SEEEREKQCL TSMSDAISQA REPKSVDSVD STQLENASGN NSDDHVATVP 480 TVKGGVRRKH HRAWSLTEVT KLVDGVAMFG AGRWSEIKRL SFSSYAHRTS VDLKDKWRNL 540 LKASFANSQV DKGVNPRKNA PIPIPATILV KVRELAELNG QAPHVLKAGS NKNSGSSVNE 600 NKSGYL*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MKMVVGIKGN EEGVVEDGAA VKLSSGLAPL KQEADPIVYK LVRVDFDGRF VPATDDELME  60
VEDLLELEKS DMLSIPDAVE TVAHIADKDE LDESFEKPDL EKHEGLSEIK LTKIDEENLR  120
APAEDSLPKS ASSSKDRLVE GSVNNGEESS SSPHDGLNKN GSSGSKPDFS LIKGEIDLDK  180
LTTKELHETF RATFGRRTSV KDKMWLKRRI AMGLTNSCDV TVTSFIINDG KLLKKEELGK  240
NMDCGNSVAG EVCSAGNDEP VNLVAPNVRE DTLDVELGNS FTESGCRSDD HLDHRAAKRA  300
RKPTKRYIEE SSDTEKDFGG KSISPSKHFG QDKASCKEAV KPACGVHSGD FITRPDSIGG  360
SGVQVPYVSR IRRCRPRKSI MALTKFNSSD GALNRKTVES SAAVSKPQPD YHSRAKLVET  420
KPIPFEEPIA SEEEREKQCL TSMSDAISQA REPKSVDSVD STQLENASGN NSDDHVATVP  480
TVKGGVRRKH HRAWSLTEVT KLVDGVAMFG AGRWSEIKRL SFSSYAHRTS VDLKDKWRNL  540
LKASFANSQV DKGVNPRKNA PIPIPATILV KVRELAELNG QAPHVLKAGS NKNSGSSVNE  600
NKSGYL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	378	RRCRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-79	MYB_related family protein