PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009828-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 395aa MW: 44545.5 Da PI: 5.2592

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009828-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.5	2.5e-39	83	182	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l++ ++++am++++y+++ara+dPv G++++i++l++q++ kael+ AUR62009828-RA 83 ACAACKYQRRKCASDCALAPYFPHDRQRQFLNAHKLFGVSNITKIIRNLNPPDKDIAMRTIIYQSDARAKDPVGGCYRIIRDLHHQIAYCKAELD 177 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ AUR62009828-RA 178 LVLQQ 182 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MYSSLPLFLS QLHISSLPLK LYEKIREGNE EQPEKVIEKK AAYSVATQRK SQHHSPANKN 60 HKTQMSIISS NSSSSRISNG TQACAACKYQ RRKCASDCAL APYFPHDRQR QFLNAHKLFG 120 VSNITKIIRN LNPPDKDIAM RTIIYQSDAR AKDPVGGCYR IIRDLHHQIA YCKAELDLVL 180 QQLDLCKAQL YQQQHAQLYQ IATALTPQPL DPDSQGAEIL TCDNDSYQQY QALMRCYYYD 240 EAEQGNNNEQ QYIPISQQQD QYSWVAPPND DAVLASSNSS TSHGDCFVMK NDFGSECDGL 300 EMKPQIQIVA NGAPYDDDKE YGSKFDESST HVDLSCCDLQ GDGLKFDHQQ TTDLSEEAAL 360 KEENIVLRNP EEESFNHISE HDLRNAATLF TLTN*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MYSSLPLFLS QLHISSLPLK LYEKIREGNE EQPEKVIEKK AAYSVATQRK SQHHSPANKN  60
HKTQMSIISS NSSSSRISNG TQACAACKYQ RRKCASDCAL APYFPHDRQR QFLNAHKLFG  120
VSNITKIIRN LNPPDKDIAM RTIIYQSDAR AKDPVGGCYR IIRDLHHQIA YCKAELDLVL  180
QQLDLCKAQL YQQQHAQLYQ IATALTPQPL DPDSQGAEIL TCDNDSYQQY QALMRCYYYD  240
EAEQGNNNEQ QYIPISQQQD QYSWVAPPND DAVLASSNSS TSHGDCFVMK NDFGSECDGL  300
EMKPQIQIVA NGAPYDDDKE YGSKFDESST HVDLSCCDLQ GDGLKFDHQQ TTDLSEEAAL  360
KEENIVLRNP EEESFNHISE HDLRNAATLF TLTN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-52	LBD family protein