PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009440-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 362aa MW: 39966.4 Da PI: 5.0527

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009440-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.1	3.2e-07	10	51	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+++ + + + +C+ ++ +lC +C +H H++ AUR62009440-RA 10 RACDTCRSAPCTVYCKADSAYLCTSCDARIHAAnqlasrHER 51 67*****************************65667777765 PP
2	zf-B_box	29.5	1.5e-09	52	97	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ AUR62009440-RA 52 VWVCEACERAPAAFLCKADAASLCATCDADIHSAnplarrHHRVPI 97 689*****************************66899999877775 PP
3	CCT	70.7	3.6e-24	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ AUR62009440-RA 292 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 335 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
PGGDTNSWAR ACDTCRSAPC TVYCKADSAY LCTSCDARIH AANQLASRHE RVWVCEACER 60 APAAFLCKAD AASLCATCDA DIHSANPLAR RHHRVPIMPV GCTYGPSDGR MSEDGFLDLA 120 EGDDQTTDHE GDEDEAASWL LLNPGKNSNK LTTNGFLTGG GEVDEYLDLF EYNSGAADNQ 180 FCEQYNQQQE FSVPEKSCGG DSVVPVQCRE GKDHQIQYQN FLFGMECETK SEYNYNTSIS 240 HSVSVSSLDV GVVPESTMSD MSVSHPRPPK GTIDLFSSPP MQVPTQLSPL DREARVMRYR 300 EKKKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDVEAE MDQMFTNSLM SDGGYGIVPS 360 F*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

PGGDTNSWAR ACDTCRSAPC TVYCKADSAY LCTSCDARIH AANQLASRHE RVWVCEACER  60
APAAFLCKAD AASLCATCDA DIHSANPLAR RHHRVPIMPV GCTYGPSDGR MSEDGFLDLA  120
EGDDQTTDHE GDEDEAASWL LLNPGKNSNK LTTNGFLTGG GEVDEYLDLF EYNSGAADNQ  180
FCEQYNQQQE FSVPEKSCGG DSVVPVQCRE GKDHQIQYQN FLFGMECETK SEYNYNTSIS  240
HSVSVSSLDV GVVPESTMSD MSVSHPRPPK GTIDLFSSPP MQVPTQLSPL DREARVMRYR  300
EKKKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDVEAE MDQMFTNSLM SDGGYGIVPS  360
F*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-131	CO-like family protein