PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009385-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 668aa MW: 73219.8 Da PI: 6.7255

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009385-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.5e-08	238	258	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg AUR62009385-RA 238 PCPEFRK-GTCRRGDLCEYAHG 258 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MKEPNHVFAE LENCFSNILE LAANDDVQGF NKILEHDASA LCQAGLWYGR QMGSRQMVLE 60 HRTPLMVAAT YGSLDVLKLI LAQPGVDVNF SDIPDKSTAL HCAALEYLLA NNDSHRSIIG 120 PKLRVSVRSS GTSSPTLSSS PGNDSSSCPS DSMLSPKILK PSDHSINQPL EKKEYPIDPS 180 LPDIKNNIYA TDEFRMFSFK VRHCSRAYSH DWTECPFVHP GENARRRDPR CYNYSCVPCP 240 EFRKGTCRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHL PAELRPIYVS 300 TGSAAPSPRA SASAATVMDM EAAMNLFPGS PSAISAMSPS PFSPQCLSPP TNACSNSPLP 360 PQQNFPTLHL PGSNLQSSRL RSSLSARDIS PEDYNMLCDF DVQQHLLDDH MASFSQQRSN 420 PSSLMRGVRT KTLAPSNLEE LFCSEIASSP RYSDQAAASV FSPTHKSVLL NQFQHQQSFL 480 APINTSNIYS PKSAEHPLLH ASSFNVSSPG RMSPRSVEPI SLMSARLSAL ALRXXXXXXX 540 XXXFSSRELG IKHTSSLVGS PVNSWSNWGS PNGKVDWSVN GGGDEMGPLR RSSSFELGNN 600 GEEPDLSWVQ SLVKESPPEM EEKHVAAVSG AISSSEGLAT KTSKDPTDYS VVGAWLEHMQ 660 LDQIVTQ*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MKEPNHVFAE LENCFSNILE LAANDDVQGF NKILEHDASA LCQAGLWYGR QMGSRQMVLE  60
HRTPLMVAAT YGSLDVLKLI LAQPGVDVNF SDIPDKSTAL HCAALEYLLA NNDSHRSIIG  120
PKLRVSVRSS GTSSPTLSSS PGNDSSSCPS DSMLSPKILK PSDHSINQPL EKKEYPIDPS  180
LPDIKNNIYA TDEFRMFSFK VRHCSRAYSH DWTECPFVHP GENARRRDPR CYNYSCVPCP  240
EFRKGTCRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHL PAELRPIYVS  300
TGSAAPSPRA SASAATVMDM EAAMNLFPGS PSAISAMSPS PFSPQCLSPP TNACSNSPLP  360
PQQNFPTLHL PGSNLQSSRL RSSLSARDIS PEDYNMLCDF DVQQHLLDDH MASFSQQRSN  420
PSSLMRGVRT KTLAPSNLEE LFCSEIASSP RYSDQAAASV FSPTHKSVLL NQFQHQQSFL  480
APINTSNIYS PKSAEHPLLH ASSFNVSSPG RMSPRSVEPI SLMSARLSAL ALRXXXXXXX  540
XXXFSSRELG IKHTSSLVGS PVNSWSNWGS PNGKVDWSVN GGGDEMGPLR RSSSFELGNN  600
GEEPDLSWVQ SLVKESPPEM EEKHVAAVSG AISSSEGLAT KTSKDPTDYS VVGAWLEHMQ  660
LDQIVTQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	1e-151	C3H family protein