PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009376-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 386aa    MW: 43422.5 Da    PI: 7.6107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009376-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-095676526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f++r G C yG+rC++ H+
  AUR62009376-RA 56 ICTFYQR-GACAYGSRCRYDHV 76
                    7**9999.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MALLINLRLI PAFVIFNVNI TITYYRLICK FFKHGACLKG EHCEYAHDWN APANNICTFY  60
QRGACAYGSR CRYDHVKVSQ PQSSASSSST AYSGTETPKI TTSGMAPVSP VSIFQPELSP  120
SSRQFFPPSK AAWSQQSDIS DTVEDDLIPQ PRSDRLADQV ICSFAAAGHC PKGEKCPHIH  180
GELCPTCGKH CLHPYRPKER EEHFQTCEKM QKHLEALKRS QEIECSVCLE RVLAKTAASE  240
RKFGLLSECD HPFCITCIRF WRNSSPTSGM DVNSTLRACP ICRKLSYFVI PSVLWYFSKE  300
EKDEIVDSYM AKLKSIDCKY FDFGSGSCPF GTSCFYKHSY RDGSLEEVVL RHLGAADGET  360
PCGLPQKFAY KLNQVWESFQ CLYES*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-139C3H family protein