PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009262-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91896.3 Da    PI: 5.7615
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009262-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17e-192178457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  AUR62009262-RA 21 YVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                    6789****************************************************97 PP
2START170.41.2e-531653732205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v s+g  g+++l 
  AUR62009262-RA 165 IAEETLTEFLSKATGTAVEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVSLEPT-RVAEILKDRLSWYRDCRAVDVMNVMSTGngGTIELL 258
                     789*******************************************************.9999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+al++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+    +++vRae  pSg+li+p+++g+s +++v+h+dl+ + ++++lr+l+
  AUR62009262-RA 259 YMQLYALTTLAPaRDFWLMRYTSLLEDGSVVICERSLNNTQNGPSmpsVQHFVRAEIMPSGYLIRPCEGGGSIIHVVDHMDLEPWRVPEVLRPLY 353
                     ********************************************9888899******************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  +++t++a+l+++++
  AUR62009262-RA 354 ESSTLLAQRTTMAALRQLRQ 373
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    
MMAVSSACRD ANKMAADAGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK ESSRLQAVNR KLTAMNKLLM EENDRLQKQV GQLVYENSYF  120
RQHTQNAATL ATTDTSCESV VTSGQQQATS QRPPKDASPA GLVSIAEETL TEFLSKATGT  180
AVEWIQMPGM KPGPDSIGII AISHGCTGVA ARACGLVSLE PTRVAEILKD RLSWYRDCRA  240
VDVMNVMSTG NGGTIELLYM QLYALTTLAP ARDFWLMRYT SLLEDGSVVI CERSLNNTQN  300
GPSMPSVQHF VRAEIMPSGY LIRPCEGGGS IIHVVDHMDL EPWRVPEVLR PLYESSTLLA  360
QRTTMAALRQ LRQISQEISQ PNVTGFGRRP AALRALSQRL SKGFNEAVNG FMDEGWSMMD  420
SDGIDDVTLL VNSSPSKMMG ENQFYSNGFP SVGTAVLCAR ASMLLQNVPP AVLLRFLREH  480
RSEWADSGID AYAAAAVKAA PCTIPVARTG SDIDSIIVCL QQFMEVVRLE NLGHYREDMF  540
MPGDIFMLQL CSGVDENAVG ACAELVFAPI DASFSDDAPL LPSGFRIIPI DSSKDVSSPK  600
CTLDLTSALE VGAAGNKSLA DNSGSGNGKS VMTIAFQFAF EIHLQESVAT MARQYVRSII  660
SSVQRVASAL SPSRFGSLNG SPLSPGTPEA QTLARWICQS YRFYLGVELL KPGNEGGESI  720
LKSLWSHSDA ILCCSLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD EQGRKTLFTE  780
LPQIMQQGFI CLQGGICMSS MGRPISYERA VAWKVFNDAE DAQCMCFMFI NWSFV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein