PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62009210-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 327aa MW: 36703.1 Da PI: 7.3954 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 112 | 132 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r G C+ Gd+C +aHg AUR62009210-RA 112 ACPEFRR-GSCRKGDSCEYAHG 132 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence |
MMMIHRQHPT VDIPQWDPPY EDPTTPIFSP QTNDYFAALK RYLPSSEFDD SDTESSDLPF 60 DSFTFDNFRM YEFKVRKCVR GRSHDWTECP YAHPGEKARR RDPRKYHYSG TACPEFRRGS 120 CRKGDSCEYA HGVFECWLHP ARYRTQPCKD GPHCKRRVCF FAHSPEQLRV LPSLSESPRR 180 LGGGDTCKGF VGYSPTSVFD SFPDSPPLSP SVSELASAMR GLQLGPRNVW GVQMGCSSPR 240 SPRGFMGSGL CGGSSGPTTP NRSGLGLFDP FEVGFEEEVP MERVESGKDL RARMYAKLSK 300 ENSLDCDRVN SVSSGPDFGW VSDLIK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 3e-90 | C3H family protein |