PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62009138-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21211.3 Da PI: 5.9062 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 81.4 | 1.4e-25 | 14 | 110 | 2 | 98 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 Ca+C++++ C ++C lapyfpae++++ n+ k+F+ + ++ +lk+++ +++++a++ ++++Aear+rdPv G++ +il+l+++++ +++l + AUR62009138-RA 14 CAVCQIQGLICDANCLLAPYFPAEKEQEATNILKVFSYDYITDILKDIHSTQHDIAIKVIAFNAEARLRDPVGGCMPTILTLRRNIAFYHNQLRE 108 *****************************************************************************************999988 PP DUF260 97 lk 98 ++ AUR62009138-RA 109 VH 110 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MMNTPKSVAQ RRGCAVCQIQ GLICDANCLL APYFPAEKEQ EATNILKVFS YDYITDILKD 60 IHSTQHDIAI KVIAFNAEAR LRDPVGGCMP TILTLRRNIA FYHNQLREVH YLLSYIKFLK 120 YGTPINPVNP TPSLVGDDHI QASLGDHIPY GGGDDQIEIG QAQAMVDPPP SYRVGDQAQA 180 SQMLIDFLPL P* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 4e-19 | LBD family protein |