PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008990-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 472aa MW: 51640.6 Da PI: 8.308

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008990-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.1	2.2e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+ql+q+ AUR62008990-RA 4 SCNGCRVLRKGCSEDCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGQWQLCQT 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 + e++l ++ AUR62008990-RA 99 AIEAVLKGA 107 *99988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GQWQLCQTAI EAVLKGAPIT PIPTEAAPNS 120 PPIQGAYDIR HVSKDEHAHS NNSSAAAGLH RVKPTRTRFK RVGSKSKPAS KAESAAGGAA 180 TSALQVMAVA ESTRPDSAEF NGSSTSHDST VSHPDDPGST THTSLVSTDV MVDAAEEVVV 240 ERGSVRHDGD DDGEDKLIHG ALCGTLSGSL VPPISREAWL LLAKTYANPS KGHIKQIKER 300 LRNITNGPRS ITEFMYDIKT CADQLASLGK PMDDDDIVER ILEQLNDLDY DQVISDVQSR 360 ESGITFDELN EKLVNREAYI LHHQQSQAAT LSHPASVNHV YKQGAKKTYG GHSSHTSMQP 420 SNDKPPFKPY HGKCQWRRLV ILCLNARCFV NNFPIFLLLS RHLRLLLKVM K*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MRMSCNGCRV LRKGCSEDCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GQWQLCQTAI EAVLKGAPIT PIPTEAAPNS  120
PPIQGAYDIR HVSKDEHAHS NNSSAAAGLH RVKPTRTRFK RVGSKSKPAS KAESAAGGAA  180
TSALQVMAVA ESTRPDSAEF NGSSTSHDST VSHPDDPGST THTSLVSTDV MVDAAEEVVV  240
ERGSVRHDGD DDGEDKLIHG ALCGTLSGSL VPPISREAWL LLAKTYANPS KGHIKQIKER  300
LRNITNGPRS ITEFMYDIKT CADQLASLGK PMDDDDIVER ILEQLNDLDY DQVISDVQSR  360
ESGITFDELN EKLVNREAYI LHHQQSQAAT LSHPASVNHV YKQGAKKTYG GHSSHTSMQP  420
SNDKPPFKPY HGKCQWRRLV ILCLNARCFV NNFPIFLLLS RHLRLLLKVM K*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-74	LBD family protein