PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62008571-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 457aa    MW: 48238.5 Da    PI: 8.4105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62008571-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-104368227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    + + C +++rtG+C +G rC+++H++
  AUR62008571-RA 43 GVSDCVYYMRTGFCGFGTRCRYNHPR 68
                    6789********************96 PP

2zf-CCCH40.35.2e-1388114127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tGtCk+G +CkF+H++
  AUR62008571-RA  88 PGEPICQYYLKTGTCKFGTTCKFNHPR 114
                     5799*********************96 PP

3zf-CCCH36.77.1e-12135160227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G +CkF+H++
  AUR62008571-RA 135 GEKECSYYLKTGQCKFGITCKFHHPQ 160
                     7899********************97 PP

4zf-CCCH37.53.8e-12288314127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G++C+++H+p
  AUR62008571-RA 288 PGEPECQYYLKTGSCKFGASCRYHHPP 314
                     5799*********************97 PP

5zf-CCCH39.87.4e-13334359126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++t +C f++++G+Ck+G++CkF H+
  AUR62008571-RA 334 PGTQPCTFYMQNGYCKFGPTCKFDHP 359
                     689**********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MEMYGRNQGS KVDPPAEWGE TGLEESMWRL GLSGRETYPE RPGVSDCVYY MRTGFCGFGT  60
RCRYNHPRDR AAAVAAARLV GGEYPERPGE PICQYYLKTG TCKFGTTCKF NHPRNAGGSL  120
TNAPLNIHGY PLRPGEKECS YYLKTGQCKF GITCKFHHPQ PAGMSMPAAA PPFYPTVQPP  180
SVPIPEPAAG SSPSYRVARP PLVPGSYVPG SYGPVLLSPG VVPMPGWGSY SGPVSPVLSP  240
GGQPAAGGAS VYGVTTLSPS TPGLAGSYAP LPSSAGKSVT EHKFPERPGE PECQYYLKTG  300
SCKFGASCRY HHPPDRGASA AACFLGPLGL PLRPGTQPCT FYMQNGYCKF GPTCKFDHPV  360
GMMKYSPSAS SLAETPIAPY LSGPPLVTLP LSPSSTELLP EHALGSQRDL QSNRTLSSGS  420
SSVGLTSSNV QQSGQGPALL SSSRSIGEDD EVRHSS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-138C3H family protein