PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008552-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 370aa MW: 41190.5 Da PI: 7.5676

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008552-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.2	3.8e-27	87	219	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl k+ i++l+ + AUR62008552-RA 87 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDTTKHDIDKLPPLpvipgsfnpsqgaygvplssstpffdasllps 181 78*************************************************************88888777777777666655555555544433 PP TCP 66 .................ssssaseceaesssssasnsssg..................k 89 + + + AUR62008552-RA 182 rkecgininrttedvdvD---------------------EedeslvaklkywdsnslmR 219 333333333222222220.....................02222444444454443321 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MAARDILDHS RGVKLNLDAS DITNKHYDEE SYKEMMSLRD KDGPSYTTKQ ELGDSSKLSI 60 AASSSSSRQW SSGFKNPRIV RVSRTFGGKD RHSKVCTIKG LRDRRIRLSV PTAIQLYDLQ 120 DRLGLSQPSK VIDWLLDTTK HDIDKLPPLP VIPGSFNPSQ GAYGVPLSSS TPFFDASLLP 180 SRKECGININ RTTEDVDVDE EDESLVAKLK YWDSNSLMRS KQKGVDHHHN DQGSLGVPSS 240 HNDHHQGSSQ SSSTPQPPSS LSLSSMSQFF LCPSMTTTSF FPPHQQASFM NNSHHQVEND 300 LRQFNRFPLS NTSPFSSSFH NNSSGLDMKP AFPLSMNHDP HLQQQDDQNR QGNKSSSVHH 360 NPWKESSGN*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MAARDILDHS RGVKLNLDAS DITNKHYDEE SYKEMMSLRD KDGPSYTTKQ ELGDSSKLSI  60
AASSSSSRQW SSGFKNPRIV RVSRTFGGKD RHSKVCTIKG LRDRRIRLSV PTAIQLYDLQ  120
DRLGLSQPSK VIDWLLDTTK HDIDKLPPLP VIPGSFNPSQ GAYGVPLSSS TPFFDASLLP  180
SRKECGININ RTTEDVDVDE EDESLVAKLK YWDSNSLMRS KQKGVDHHHN DQGSLGVPSS  240
HNDHHQGSSQ SSSTPQPPSS LSLSSMSQFF LCPSMTTTSF FPPHQQASFM NNSHHQVEND  300
LRQFNRFPLS NTSPFSSSFH NNSSGLDMKP AFPLSMNHDP HLQQQDDQNR QGNKSSSVHH  360
NPWKESSGN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-43	TCP family protein