PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62008429-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 359aa    MW: 40671.2 Da    PI: 6.7733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62008429-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-22953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++snrqvt+skRr+gi+KKA EL +LCd+++ +++fs+tgk
  AUR62008429-RA  9 KRLESSSNRQVTYSKRRTGIIKKARELAILCDIDIVLLMFSPTGK 53
                    689****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KARELAILCD IDIVLLMFSP TGKPTLFLGE  60
RSNLEQVITK FAQLTPQERA KRKLESLEAL KKTFKKCDHD VNIEDFVASS SQTAEELANQ  120
VGLLQAQITE AHKRLSCWSN PDKIDNVEHL RQMENSLKES LNQIRLHKDN IGKHQFMSLD  180
CSNQFQNGMH IPLMMGNMQE CQLLSWLSSN DNQHLLLSED TNFLSHRDMK CTSDASLSGY  240
SGYYGDAKLE MENARQCENA RQDCGSLNEL TANACMGVQI GEQYPYSPYG NINLPEEKKV  300
MPDNGINFQG NPMDYQIPGH FDMPRSIYDT RPQPWAPAAL QCPIPMFNEN SYPQVGSQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-107M-type_MADS family protein