PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008235-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 819aa MW: 95570.7 Da PI: 6.5202

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008235-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	171	273	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 Y+ +A++vGFs+rk++++++ +++ +t++ +vCs egkr++ kk ++++ r+ + trt+Cka+l+ k+++dgk++v + + AUR62008235-RA 171 LYSLHASTVGFSIRKHTTRYRLHTRIVTEKYYVCSSEGKRHTAAKKtnmvlmvdednkdlKQRKPRQVSITRTNCKASLREKMNDDGKFKVVSHV 265 7999************************************99999*******98888999999********************** PP FAR1 83 leHnHela 90 l+HnHel+ AUR62008235-RA 266 LQHNHELT 273 ****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MEERENSNFP DSKLLHQATM EEREIYNFRS TMPETSKSSN YENLMREFLQ LQRENRPPLT 60 QYPEKTWSFD LNQTFREDEA ENFVDDLDQF NDDNIQNSKV PEIQIQDIEN QGVLNTLEDE 120 DQVIPNTLDE EGQPVDEDED TNPKPTDTTG LDMEGSLVGV ERDTYQEIYD LYSLHASTVG 180 FSIRKHTTRY RLHTRIVTEK YYVCSSEGKR HTAAKKTNMV LMVDEDNKDL KQRKPRQVSI 240 TRTNCKASLR EKMNDDGKFK VVSHVLQHNH ELTRKQWHYL HRSEREVTIE KAEAIKTMKS 300 AGLSTMDTYN YMCTEGNGEE NLGHSVVDHL NFCSRLRMEQ IEAGDAQKLV NILIEEQKED 360 PNFYFRVKFD KEGNEKTESF VWLLETFKKS MENRIPTSIF TYQDQGMATA IEQVLPDTRH 420 RLCIWHLEQN AITRFGALKR DNEFKKIFIK CLKGCVTETE FEERWKEMIQ KFDLVNHAWY 480 QRVYNLKEKW CPALSKDFFS AGILSSQRSE STNHAVGFRA NKSTTLTEFY GIFVRTIKRW 540 RSDEKYNEFT CSKSIAFTSL PLSGMLKHVA QVYTLSLFRD FEEEFGYSMA TTVQILGRTE 600 ENIIFYEVSL EEKPWSSQQV SYIHESQTIW CTCKNFEASG WLCYHCLRIL HLHSITRIPE 660 KYISKRWTKL AKSEVWNRME KKDPKLPYTP WRHTMMRKYY NLILKSQENE KARAFMEENF 720 KSCMKMVEDL LAAEAFTEEV AASDDNSNVA ESAQSNNNIA SSSTSTTIPT ILDPKRAVTK 780 GRSKRAKGAL EKGKKSKQKA LPDPNSEFGS KTPTVRLF*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MEERENSNFP DSKLLHQATM EEREIYNFRS TMPETSKSSN YENLMREFLQ LQRENRPPLT  60
QYPEKTWSFD LNQTFREDEA ENFVDDLDQF NDDNIQNSKV PEIQIQDIEN QGVLNTLEDE  120
DQVIPNTLDE EGQPVDEDED TNPKPTDTTG LDMEGSLVGV ERDTYQEIYD LYSLHASTVG  180
FSIRKHTTRY RLHTRIVTEK YYVCSSEGKR HTAAKKTNMV LMVDEDNKDL KQRKPRQVSI  240
TRTNCKASLR EKMNDDGKFK VVSHVLQHNH ELTRKQWHYL HRSEREVTIE KAEAIKTMKS  300
AGLSTMDTYN YMCTEGNGEE NLGHSVVDHL NFCSRLRMEQ IEAGDAQKLV NILIEEQKED  360
PNFYFRVKFD KEGNEKTESF VWLLETFKKS MENRIPTSIF TYQDQGMATA IEQVLPDTRH  420
RLCIWHLEQN AITRFGALKR DNEFKKIFIK CLKGCVTETE FEERWKEMIQ KFDLVNHAWY  480
QRVYNLKEKW CPALSKDFFS AGILSSQRSE STNHAVGFRA NKSTTLTEFY GIFVRTIKRW  540
RSDEKYNEFT CSKSIAFTSL PLSGMLKHVA QVYTLSLFRD FEEEFGYSMA TTVQILGRTE  600
ENIIFYEVSL EEKPWSSQQV SYIHESQTIW CTCKNFEASG WLCYHCLRIL HLHSITRIPE  660
KYISKRWTKL AKSEVWNRME KKDPKLPYTP WRHTMMRKYY NLILKSQENE KARAFMEENF  720
KSCMKMVEDL LAAEAFTEEV AASDDNSNVA ESAQSNNNIA SSSTSTTIPT ILDPKRAVTK  780
GRSKRAKGAL EKGKKSKQKA LPDPNSEFGS KTPTVRLF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-52	FAR1 family protein