PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008106-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HB-other

Protein Properties

Length: 874aa MW: 94683.7 Da PI: 4.4142

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008106-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.4	1e-12	718	760	10	52
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L e F++n+yp++e++e+LA++lgLt +V WF N R AUR62008106-RA 718 AVTKRLYESFKENQYPDREAKEKLANELGLTAYKVDKWFGNAR 760 66899************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence
MAEFTSSGKF GNASIPKQMI EENQVFSYQS SVNEPIVAEL QMGNQTDTIA NEKPVVELSK 60 NEIGSIGNQL GEPVQMSNVV SDKIPLEGVD VSLRVEQESE NQREGGHDSV KCEQPGLKER 120 DDSEAGPDSV KAEQNAESKD DTNVLFEMEG VQISLAEDEE NLISDMLKSS GKTEPNEFDA 180 CDAEVIPNAQ TSPLGVACDT EVTPNVHSTP SPEKAGDKVR IVVLAAPAYD ANEKPIRGRR 240 SKAVVASEKK TPRQLSAASK RDLRSRSNVN SKDPEPSIIV ETTKGSTGRR GRKKGKGNDG 300 KSDDAFSKMR KHLRYLLHRI HYEQNLLDAY SSEGWRGQSV EKLRPEKELQ RAKADINRSK 360 LKIRDLFQRF DSMLAEGKFP ETLYDADGLI DSEDIFCAKC ASKDLSPGND IILCDVPPGD 420 EGWLCPACDC KLDCVDLLND SQGTRLAIED KWEKVFPEAV SAMVSKELDD VMGLPSDDSE 480 DNEYNPDGTD DDANAEGNES SSATSDSDES EDDDFSSVSE DLGPIRGAEQ NLGLPSDDSE 540 DDDFNPDAAN VNEEGVEPES SSSDFTSASE DLGAAIGDDG TSDINEPSLP LDPEQDLGES 600 SPITSKRCVQ RLDYKKLYDE TYGNAASDPS DDDEEWTDVV GTRKRKSSQE KAVSVSNMGT 660 SASADGTCGV GSSRRRGRPK ASRQAANGSP VPLQESPQKK SPAGSSKRRP PYNRLGEAVT 720 KRLYESFKEN QYPDREAKEK LANELGLTAY KVDKWFGNAR WSFHHHPSRL EANMTRVVSN 780 SSTHSGACIG GESALADTIT AVPECGSADI SALDVASGKI SSPPKSGMKV EGNKSMLETS 840 KAEVSKEGTQ TESLEIAETS QGKLPRKRRK SGA*

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence

MAEFTSSGKF GNASIPKQMI EENQVFSYQS SVNEPIVAEL QMGNQTDTIA NEKPVVELSK  60
NEIGSIGNQL GEPVQMSNVV SDKIPLEGVD VSLRVEQESE NQREGGHDSV KCEQPGLKER  120
DDSEAGPDSV KAEQNAESKD DTNVLFEMEG VQISLAEDEE NLISDMLKSS GKTEPNEFDA  180
CDAEVIPNAQ TSPLGVACDT EVTPNVHSTP SPEKAGDKVR IVVLAAPAYD ANEKPIRGRR  240
SKAVVASEKK TPRQLSAASK RDLRSRSNVN SKDPEPSIIV ETTKGSTGRR GRKKGKGNDG  300
KSDDAFSKMR KHLRYLLHRI HYEQNLLDAY SSEGWRGQSV EKLRPEKELQ RAKADINRSK  360
LKIRDLFQRF DSMLAEGKFP ETLYDADGLI DSEDIFCAKC ASKDLSPGND IILCDVPPGD  420
EGWLCPACDC KLDCVDLLND SQGTRLAIED KWEKVFPEAV SAMVSKELDD VMGLPSDDSE  480
DNEYNPDGTD DDANAEGNES SSATSDSDES EDDDFSSVSE DLGPIRGAEQ NLGLPSDDSE  540
DDDFNPDAAN VNEEGVEPES SSSDFTSASE DLGAAIGDDG TSDINEPSLP LDPEQDLGES  600
SPITSKRCVQ RLDYKKLYDE TYGNAASDPS DDDEEWTDVV GTRKRKSSQE KAVSVSNMGT  660
SASADGTCGV GSSRRRGRPK ASRQAANGSP VPLQESPQKK SPAGSSKRRP PYNRLGEAVT  720
KRLYESFKEN QYPDREAKEK LANELGLTAY KVDKWFGNAR WSFHHHPSRL EANMTRVVSN  780
SSTHSGACIG GESALADTIT AVPECGSADI SALDVASGKI SSPPKSGMKV EGNKSMLETS  840
KAEVSKEGTQ TESLEIAETS QGKLPRKRRK SGA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	642	647	TRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	7e-42	HB-PHD family protein