PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007890-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 424aa MW: 46751.1 Da PI: 7.0497

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007890-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	131	206	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+y++rhkvC+vh+k+p+v+v+g+e+rfCqqCsrfh l efD++krsCrrrL+ hn+rrrk+q AUR62007890-RA 131 CQVLGCNKDLSSFKSYYKRHKVCDVHTKTPKVIVDGIEKRFCQQCSRFHLLAEFDDTKRSCRRRLSAHNKRRRKPQ 206 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MDSWKHMGCE FKPMFNGETY PLISNTQALE RMDLMDLGFA DDIRKSYSIS SEPSGEVFSD 60 EIGTDYPQFG EESNHQQDFP LVDLKLGRLE DGGIDKDSEF SKFNAAESSV RLSSPAKKAR 120 SSMSSNRSSN CQVLGCNKDL SSFKSYYKRH KVCDVHTKTP KVIVDGIEKR FCQQCSRFHL 180 LAEFDDTKRS CRRRLSAHNK RRRKPQLASE PGSGIIDFSS SLAFPEVMPS VYLGPSKYEE 240 GIDNSIKSSN FLLQMGCVGE KINKFPANVK DDIAGFAKPT NETLSNIQQT SRALSLLSAQ 300 SHSISSQLLE TASATLTNRG NHADSNPGHS LNHSAGIFNK VSASGPHEPG IYSMEEDGPT 360 MINPNNSSTV GLHLPNDGIS RPGLRNTDCH HPKERGIILN LLQLSSNLQR VEQQKHSTEN 420 EAG*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MDSWKHMGCE FKPMFNGETY PLISNTQALE RMDLMDLGFA DDIRKSYSIS SEPSGEVFSD  60
EIGTDYPQFG EESNHQQDFP LVDLKLGRLE DGGIDKDSEF SKFNAAESSV RLSSPAKKAR  120
SSMSSNRSSN CQVLGCNKDL SSFKSYYKRH KVCDVHTKTP KVIVDGIEKR FCQQCSRFHL  180
LAEFDDTKRS CRRRLSAHNK RRRKPQLASE PGSGIIDFSS SLAFPEVMPS VYLGPSKYEE  240
GIDNSIKSSN FLLQMGCVGE KINKFPANVK DDIAGFAKPT NETLSNIQQT SRALSLLSAQ  300
SHSISSQLLE TASATLTNRG NHADSNPGHS LNHSAGIFNK VSASGPHEPG IYSMEEDGPT  360
MINPNNSSTV GLHLPNDGIS RPGLRNTDCH HPKERGIILN LLQLSSNLQR VEQQKHSTEN  420
EAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	205	KRSCRRRLSAHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-38	SBP family protein