PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007846-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 530aa MW: 56998.3 Da PI: 5.7823

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007846-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	343	391	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq AUR62007846-RA 343 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 391 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MEMNDKDKLE VEKRNEEPLS YHPPGISADW RYDIPNYANS SMGLVSSGNS MAVCGDAVGP 60 SCSSGSMVDS FSPTVWEHSV NTAPLGFSEM NVHNGAGVSD PLSMLKSGLY LPSMSGMLPH 120 SLSQFPADSA FIERAARFSS FSGGHFGDML NPLGIHQSDS PYVRGGAMMQ SPQEVLPGNA 180 YKTLAGGHPQ NPEASLAETS KDVSVTPERG AVEGNSPKNE TMLERSHEEA KQAVSMSGND 240 SDEPEFSGGA AQEEGVPLTA KTAGAKKRKR GNQDAEAERS NGTQQHSDET RKNISEIQQK 300 GEQNLTPTGN KSNGKHVKQS SQASDSAKEE YIHVRARRGQ ATNSHSLAER VRREKISERM 360 KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPRLDF NIERLLAKDQ 420 MFSARAGPSS GLAYSPEIQM PYPSLNQTQP SIMPPSLPGS GTSSDILRRV ISSQLSNMGG 480 GYKESALQLP NAWDGELHNV VQMGFNASSP LDNQETSGSA PTGQMKAES*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MEMNDKDKLE VEKRNEEPLS YHPPGISADW RYDIPNYANS SMGLVSSGNS MAVCGDAVGP  60
SCSSGSMVDS FSPTVWEHSV NTAPLGFSEM NVHNGAGVSD PLSMLKSGLY LPSMSGMLPH  120
SLSQFPADSA FIERAARFSS FSGGHFGDML NPLGIHQSDS PYVRGGAMMQ SPQEVLPGNA  180
YKTLAGGHPQ NPEASLAETS KDVSVTPERG AVEGNSPKNE TMLERSHEEA KQAVSMSGND  240
SDEPEFSGGA AQEEGVPLTA KTAGAKKRKR GNQDAEAERS NGTQQHSDET RKNISEIQQK  300
GEQNLTPTGN KSNGKHVKQS SQASDSAKEE YIHVRARRGQ ATNSHSLAER VRREKISERM  360
KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPRLDF NIERLLAKDQ  420
MFSARAGPSS GLAYSPEIQM PYPSLNQTQP SIMPPSLPGS GTSSDILRRV ISSQLSNMGG  480
GYKESALQLP NAWDGELHNV VQMGFNASSP LDNQETSGSA PTGQMKAES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	AKKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-111	bHLH family protein