PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007650-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 1786aa MW: 194552 Da PI: 6.3245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007650-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.4e-07	1763	1785	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+ f+++G+Ck G++Ck+ H+ AUR62007650-RA 1763 QRVCK-FYESGYCKKGASCKYLHP 1785 789.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1786 aa Download sequence
MADVSARKKR GRPPKNIGVA SPPPMPIAKK TKKEDEDVCF ICFDGGNLVL CDHRDCPKAY 60 HPACVKRDES FFRRSIRWNC GWHLCNFCQR NALFMCYTCP YSLCKGCVKQ ADILCVRRNK 120 GFCRTCMTTI MLIEKIPQES KEQVQVQVDF DDTTSWEYLF KVYWIYLKEK EALTLDELTW 180 AINPWKVSGL ENNNFQQKRV EACLNNVSEL SSSNVQQETN ALKRRKTRKQ PQLLNLNSQS 240 IDKPDGNKVS GLHAVADWAS KELLEFVAHM KNGETSVLSQ FDVQALLLDY IRKNNLRDPR 300 RKCQIICDRR LENLFGKERV GHFEMLKLLE YHFKEESRTN GVIRGAAIDP LASQLENEGI 360 SGDIQTPSRE TRRQSRKKAE EKGRQIKLDS YAAIDVHNIN LIYLKRSLLE NLMVDAENFH 420 DKVVGSVVRI KISSNDQKQD MHRLVRIIGT DKATEPYKTG DKTECFMLKI LNLNKIEDVA 480 ISAISDQEFS EDECRRLRQS IKLGLVERMT VGEIQEKAVS LQPMRVNDWL ETEIKKLNHL 540 RDRASEMGHR KEYPFFFLEC VEKIELLKAP EERLRRIHEI PDVHADPKMD PSYGSDDDSG 600 ESDVKKQDGS VTPKYSNSNA IGVKLISPVR AGDMLKDDRT KAIKISVANG ERKRKNPAKF 660 HVGKAESATK PHEPSHSSDR IDAASRVLEE FNHRADLGVV SDDRGVSISQ AASDSAITAL 720 SSRMLLVADM TELEKIWHYR DPSGKVQGPF CMLQLRKWDS NGFFPTDLRV WKINETLDQS 780 ILLTDALRKQ QSNESEPHIE QLSCSQSYCG VESVDRKVNP AEEFSSNSDI PFVGHNPNEE 840 VSNKNSTDIN ATSEAYDLPM SGSCSLLVSE NQVGIDQSSG LDMKARLIES LFDTEEPSSI 900 ATPTGSSETM QVTLTVESSH PSTSTSKSVN ADLENQAMKS QPSSPNAGQL DSEVGWGLTS 960 NGAETSKFPN STPKPNPEDL KGLDLENQVT SNVSKDFDVC KTGSSASKFS HLPNLLPKTE 1020 NKDVNDRDTE NKKLAASAGF EKDSGVGSTV SGGIDISMLP GAAPKVENEG LKLHTVEVGQ 1080 SISSNVSGRD WSNISGETGI SIRSSNNLNT EGTNTHVLEN KHDGSSNVPN LDSRTSWNTI 1140 SDGIIFSDLP SAAPKLENNS LETPAVENNV CVGPKVPAQD SGTSWTSMSV GIRFPDLPTT 1200 SQLDEASRGQ AMGNKDSEIS NVPGQDSCIS WSTSSLVGEE VHLPDVASEW GAYSTVHAKP 1260 VEEFNCSLVS GSSAKLVEVG DDHGTPTSHS CQLTNPHCDT SSWQPIELST LGDESVSDLL 1320 SEVEAMESLR GMSSPTSRMN CGDDSIDSPG DDCFSPLGGL SPNLDPGKND ALSSTADMQF 1380 HLQPNITDHP HGPFSVIRNL PRTSCILSTG SLQVEDIKPA TALIPHRDFV SKTLVSAVLP 1440 PPPAASLPPL LPLPPPPSVS LSLPPPPLPS LPPASIPSLP VSLPSPPASL PSPAESLPTP 1500 PSSLPLPPAS LSTPPASSPS PPASLPSLPA SVPSSPTLPP ASLPSPPTLP PASLPSPPTL 1560 PPASLPSPPP PPPLSPPPPP PPEEKPPSPP SNLSLNRPSS PREEGEVDPA SLSLNHPEVR 1620 LQRQPSPQTP SIKVAAVDTW KQGSEHSSTG REPPGHPSGK LSGTGSILGN PNMHWNASGP 1680 GLAAVSVNSH WSTSVVSQGA RGSSLQTSPR YNHSMGRHSG TKDRSHHHHG VDSGFSKNRQ 1740 TSWSRQSSFG GGGSSRPPPP RGQRVCKFYE SGYCKKGASC KYLHP*

Sequence ? help Back to Top

Protein Sequence Length: 1786 aa Download sequence

MADVSARKKR GRPPKNIGVA SPPPMPIAKK TKKEDEDVCF ICFDGGNLVL CDHRDCPKAY  60
HPACVKRDES FFRRSIRWNC GWHLCNFCQR NALFMCYTCP YSLCKGCVKQ ADILCVRRNK  120
GFCRTCMTTI MLIEKIPQES KEQVQVQVDF DDTTSWEYLF KVYWIYLKEK EALTLDELTW  180
AINPWKVSGL ENNNFQQKRV EACLNNVSEL SSSNVQQETN ALKRRKTRKQ PQLLNLNSQS  240
IDKPDGNKVS GLHAVADWAS KELLEFVAHM KNGETSVLSQ FDVQALLLDY IRKNNLRDPR  300
RKCQIICDRR LENLFGKERV GHFEMLKLLE YHFKEESRTN GVIRGAAIDP LASQLENEGI  360
SGDIQTPSRE TRRQSRKKAE EKGRQIKLDS YAAIDVHNIN LIYLKRSLLE NLMVDAENFH  420
DKVVGSVVRI KISSNDQKQD MHRLVRIIGT DKATEPYKTG DKTECFMLKI LNLNKIEDVA  480
ISAISDQEFS EDECRRLRQS IKLGLVERMT VGEIQEKAVS LQPMRVNDWL ETEIKKLNHL  540
RDRASEMGHR KEYPFFFLEC VEKIELLKAP EERLRRIHEI PDVHADPKMD PSYGSDDDSG  600
ESDVKKQDGS VTPKYSNSNA IGVKLISPVR AGDMLKDDRT KAIKISVANG ERKRKNPAKF  660
HVGKAESATK PHEPSHSSDR IDAASRVLEE FNHRADLGVV SDDRGVSISQ AASDSAITAL  720
SSRMLLVADM TELEKIWHYR DPSGKVQGPF CMLQLRKWDS NGFFPTDLRV WKINETLDQS  780
ILLTDALRKQ QSNESEPHIE QLSCSQSYCG VESVDRKVNP AEEFSSNSDI PFVGHNPNEE  840
VSNKNSTDIN ATSEAYDLPM SGSCSLLVSE NQVGIDQSSG LDMKARLIES LFDTEEPSSI  900
ATPTGSSETM QVTLTVESSH PSTSTSKSVN ADLENQAMKS QPSSPNAGQL DSEVGWGLTS  960
NGAETSKFPN STPKPNPEDL KGLDLENQVT SNVSKDFDVC KTGSSASKFS HLPNLLPKTE  1020
NKDVNDRDTE NKKLAASAGF EKDSGVGSTV SGGIDISMLP GAAPKVENEG LKLHTVEVGQ  1080
SISSNVSGRD WSNISGETGI SIRSSNNLNT EGTNTHVLEN KHDGSSNVPN LDSRTSWNTI  1140
SDGIIFSDLP SAAPKLENNS LETPAVENNV CVGPKVPAQD SGTSWTSMSV GIRFPDLPTT  1200
SQLDEASRGQ AMGNKDSEIS NVPGQDSCIS WSTSSLVGEE VHLPDVASEW GAYSTVHAKP  1260
VEEFNCSLVS GSSAKLVEVG DDHGTPTSHS CQLTNPHCDT SSWQPIELST LGDESVSDLL  1320
SEVEAMESLR GMSSPTSRMN CGDDSIDSPG DDCFSPLGGL SPNLDPGKND ALSSTADMQF  1380
HLQPNITDHP HGPFSVIRNL PRTSCILSTG SLQVEDIKPA TALIPHRDFV SKTLVSAVLP  1440
PPPAASLPPL LPLPPPPSVS LSLPPPPLPS LPPASIPSLP VSLPSPPASL PSPAESLPTP  1500
PSSLPLPPAS LSTPPASSPS PPASLPSLPA SVPSSPTLPP ASLPSPPTLP PASLPSPPTL  1560
PPASLPSPPP PPPLSPPPPP PPEEKPPSPP SNLSLNRPSS PREEGEVDPA SLSLNHPEVR  1620
LQRQPSPQTP SIKVAAVDTW KQGSEHSSTG REPPGHPSGK LSGTGSILGN PNMHWNASGP  1680
GLAAVSVNSH WSTSVVSQGA RGSSLQTSPR YNHSMGRHSG TKDRSHHHHG VDSGFSKNRQ  1740
TSWSRQSSFG GGGSSRPPPP RGQRVCKFYE SGYCKKGASC KYLHP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein