PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007267-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LSD
Protein Properties Length: 148aa    MW: 15267.8 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007267-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.69.9e-142953125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP+GA+sV+Ca+C++V
  AUR62007267-RA 29 CSGCRNLLLYPAGATSVCCAVCNAV 53
                    ************************9 PP
2zf-LSD144.32.8e-146892125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C gC+tlL+Y rGA+sV+C++C+tV
  AUR62007267-RA 68 CAGCHTLLMYIRGATSVQCSCCHTV 92
                    ************************9 PP
3zf-LSD141.81.7e-13106130125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  AUR62007267-RA 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                     ***********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MPVPLAPYPT PPVPFTPPAA NGAQSQLVCS GCRNLLLYPA GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCAG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGASASIP EQKFNNS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-66LSD family protein