PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62007123-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 371aa MW: 40975.4 Da PI: 8.9258 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 8e-19 | 196 | 250 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k AUR62007123-RA 196 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 250 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.4e-41 | 196 | 285 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l AUR62007123-RA 196 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCEQLTEENRRLQKEVQELR-AL 285 69*************************************************************************************9.55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence |
MMVAGKEDLG LSLCLGSSNP NNSNNTTTSN CGNNNNHPHN QNHNNIGFFM NNNNNNRNFH 60 HHQPQPQPQT TSSNASPLQL NLMMMPSLAS STASPSPLLQ KLPWNRSTDS FPPSSDRNSD 120 SSRSFLRGID VNRPAGGDEE DAGVSSPNST VSTVSGKRSS GERDSMTTAG AGDDIEVERA 180 SSRGFSDDED GGENSRKKLR LTKDQSAILE ESFKEHNTLN PKQKLALAKR LGLRPRQVEV 240 WFQNRRARTK LKQTEVDCEF LKRCCEQLTE ENRRLQKEVQ ELRALKLSPQ FYMQMNPPTT 300 LTMCPSCERV AVPPSATSSS PATQPQQQPS TTIPDSRPNH TAHHRPMPVN PWAVASPVPI 360 RSFEALRPRS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 201 | SRKKLRL |
2 | 245 | 253 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-91 | HD-ZIP family protein |