PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006821-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 777aa MW: 91136 Da PI: 6.7097

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006821-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.7	8e-18	139	234	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 evGFs+rk++++++ +++ +t++ +vCs egkr++ kk ++++ r+ + trt+Cka+l+ k+++dgk++v + +l+HnHel AUR62006821-RA 139 EVGFSIRKHTTRYRLHTRIVTEKYYVCSAEGKRHNAAKKtnmvlmvdednkdlKQRKPRQVSITRTNCKASLRTKMNDDGKFKVVSHVLQHNHEL 233 79*******************************99999*******98888999999******************************9 PP FAR1 90 a 90 + AUR62006821-RA 234 T 234 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MEERENSNFP DSKLLHQATM EKREIYNFRS TMPETSKASN YENLMREFLQ LQRENRPPLT 60 QHPEKTWSFD LNQTFREGEA KNFVDDFDEF NDDNIQNSKV PEIQIQDIEN QGVSNTLEDE 120 DQVIPNTLDE EGQPVDEDEV GFSIRKHTTR YRLHTRIVTE KYYVCSAEGK RHNAAKKTNM 180 VLMVDEDNKD LKQRKPRQVS ITRTNCKASL RTKMNDDGKF KVVSHVLQHN HELTRKQWHY 240 LHRSEREVTI EKAEAIKTMK SVGLSTMDTY NYMCTEANGE ENLGHSVVDH LNFCSRLRME 300 QIEAGDAQTL VNILIEEQKE DPNFYFRVKF DKEGRISNIF WRDAMMLEDY KIYGDVLVFD 360 TTYRTNRIPT SIFTDQDQAM ATAIEQVLPD TRHRLCIWHL EQNAITRFGA LKRDNEFKKI 420 FNKCLKGCVT EKEFEERWKE MIQKFDLVNH AWYQRVYNLK EKWCPAFSKD FFSAGILCDE 480 STTLTEFYRI FVRTIKRWRS DEKYNEFTCN KSIAFTSLPL SGMLKHAAQV YTLSLFRDFE 540 EEFGYSMATT VQILGRTEEN IILYEVSLEE KPWSSQQVSY IHESQTIWCT CKNFEASGWL 600 CYHCLRILHL HSITRIPEKY ISKRWTKLAK TEVWNRMENK DPKLPYTPWR HTMMRKYYNL 660 ILKSQENEEA RAFMEENFKN CMKMVEDLLA AEAFTEEVAA SDDNSNVAES AQSTNNTASS 720 STSTTIPTIL DPKRAVTKGR SKRAKGALEK GKKSMQKALP DPNSEFGSKT LTVRLF*

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MEERENSNFP DSKLLHQATM EKREIYNFRS TMPETSKASN YENLMREFLQ LQRENRPPLT  60
QHPEKTWSFD LNQTFREGEA KNFVDDFDEF NDDNIQNSKV PEIQIQDIEN QGVSNTLEDE  120
DQVIPNTLDE EGQPVDEDEV GFSIRKHTTR YRLHTRIVTE KYYVCSAEGK RHNAAKKTNM  180
VLMVDEDNKD LKQRKPRQVS ITRTNCKASL RTKMNDDGKF KVVSHVLQHN HELTRKQWHY  240
LHRSEREVTI EKAEAIKTMK SVGLSTMDTY NYMCTEANGE ENLGHSVVDH LNFCSRLRME  300
QIEAGDAQTL VNILIEEQKE DPNFYFRVKF DKEGRISNIF WRDAMMLEDY KIYGDVLVFD  360
TTYRTNRIPT SIFTDQDQAM ATAIEQVLPD TRHRLCIWHL EQNAITRFGA LKRDNEFKKI  420
FNKCLKGCVT EKEFEERWKE MIQKFDLVNH AWYQRVYNLK EKWCPAFSKD FFSAGILCDE  480
STTLTEFYRI FVRTIKRWRS DEKYNEFTCN KSIAFTSLPL SGMLKHAAQV YTLSLFRDFE  540
EEFGYSMATT VQILGRTEEN IILYEVSLEE KPWSSQQVSY IHESQTIWCT CKNFEASGWL  600
CYHCLRILHL HSITRIPEKY ISKRWTKLAK TEVWNRMENK DPKLPYTPWR HTMMRKYYNL  660
ILKSQENEEA RAFMEENFKN CMKMVEDLLA AEAFTEEVAA SDDNSNVAES AQSTNNTASS  720
STSTTIPTIL DPKRAVTKGR SKRAKGALEK GKKSMQKALP DPNSEFGSKT LTVRLF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-64	FAR1 family protein