PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006665-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 395aa MW: 43044.4 Da PI: 8.731

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006665-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	7.1e-12	27	51	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ff+rtG C++G++C+F+H+ AUR62006665-RA 27 GEPDCSFFLRTGLCRFGSTCRFNHP 51 6899********************8 PP
2	zf-CCCH	32	2.1e-10	57	76	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ AUR62006665-RA 57 YYLKTGTCKFGATCKFNHPK 76 8*****************96 PP
3	zf-CCCH	38.1	2.7e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ AUR62006665-RA 98 EPECAYYLRTGQCKFGSTCKFHHPQ 122 799********************97 PP
4	zf-CCCH	38.1	2.6e-12	256	282	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ C+F+H++ AUR62006665-RA 256 PGQPECQYYMKTGDCKFGAVCRFHHPR 282 5789*********************96 PP
5	zf-CCCH	40.3	5.3e-13	302	328	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ AUR62006665-RA 302 PGEPLCIFYSRYGICKFGPNCKFDHPM 328 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MWPVNMRSSE ALDTGIYPPG PYPEREGEPD CSFFLRTGLC RFGSTCRFNH PSNRKLYYLK 60 TGTCKFGATC KFNHPKDKAG IAGRVPVNVL GYPLRPNEPE CAYYLRTGQC KFGSTCKFHH 120 PQPSASFRGS SVYPPVQSPT TPGQQSYPGG LTNWSLSRAS IIPSPRWQGP SSYTPLILPQ 180 GVVSVPGWNA YMGQMGSVSS PEGQQQTSGN SPGYGTARQS ESAVAASQGA YSSYRTGSIP 240 MGYYALQRDN VFPERPGQPE CQYYMKTGDC KFGAVCRFHH PRERLVPAPD CLLSALGLPL 300 RPGEPLCIFY SRYGICKFGP NCKFDHPMGI FAYNVSPTST DASAMRRYLG SSSAAGLTLT 360 SEGLVESGTG KNRRLSLSET RDLQSGDDDV ETDR*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MWPVNMRSSE ALDTGIYPPG PYPEREGEPD CSFFLRTGLC RFGSTCRFNH PSNRKLYYLK  60
TGTCKFGATC KFNHPKDKAG IAGRVPVNVL GYPLRPNEPE CAYYLRTGQC KFGSTCKFHH  120
PQPSASFRGS SVYPPVQSPT TPGQQSYPGG LTNWSLSRAS IIPSPRWQGP SSYTPLILPQ  180
GVVSVPGWNA YMGQMGSVSS PEGQQQTSGN SPGYGTARQS ESAVAASQGA YSSYRTGSIP  240
MGYYALQRDN VFPERPGQPE CQYYMKTGDC KFGAVCRFHH PRERLVPAPD CLLSALGLPL  300
RPGEPLCIFY SRYGICKFGP NCKFDHPMGI FAYNVSPTST DASAMRRYLG SSSAAGLTLT  360
SEGLVESGTG KNRRLSLSET RDLQSGDDDV ETDR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-146	C3H family protein