PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006628-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 385aa MW: 42873.1 Da PI: 6.5675

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006628-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.4	1.5e-07	86	136	7	55
AP2 7 rwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g AUR62006628-RA 86 YRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 136 79***********4444.2455535555.779999************98 PP
2	AP2	47.8	3.6e-15	179	230	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g AUR62006628-RA 179 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 230 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MASMNWLGFS LSPQEIPSQS PNQDHHNPFT STTGECFDLD WNLKGNSEIS MLMGNQEVEE 60 EPKLENFLGS SHSFRDHQQQ INGDHYRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE 120 EKAARAYDLA ALKYWGTTTT TNFPITDYEK EIEDMKHMTR QEYVASLRRK SSGFSRGASI 180 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN 240 RYDVKAILDS TTLPIGGAAK RLKDVEELTA APDKQIIRAI AAVDDHETSQ LTNAAYVIAH 300 EGNNGNGNEQ SGYENYYYYS HQGNNGTNNA IGVRGAVGTY DQGTACNNWV PTAIPALVPR 360 PNNMAAVGGH GGGAIPTFTV WNDT*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MASMNWLGFS LSPQEIPSQS PNQDHHNPFT STTGECFDLD WNLKGNSEIS MLMGNQEVEE  60
EPKLENFLGS SHSFRDHQQQ INGDHYRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE  120
EKAARAYDLA ALKYWGTTTT TNFPITDYEK EIEDMKHMTR QEYVASLRRK SSGFSRGASI  180
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN  240
RYDVKAILDS TTLPIGGAAK RLKDVEELTA APDKQIIRAI AAVDDHETSQ LTNAAYVIAH  300
EGNNGNGNEQ SGYENYYYYS HQGNNGTNNA IGVRGAVGTY DQGTACNNWV PTAIPALVPR  360
PNNMAAVGGH GGGAIPTFTV WNDT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-112	AP2 family protein