PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62006599-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 262aa MW: 27479.6 Da PI: 8.1184 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.6 | 2.9e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l+ ++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l+ AUR62006599-RA 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHSHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQVDLS 102 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++e AUR62006599-RA 103 CARTE 107 99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHSHQ 60 REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQVD LSCARTELSK YQNFAFPTPA 120 TGGCSGGGGV ITASAMTSTA ATSTAANHHH HHSQSLGIGL LGIGGGGGFS TGARDQHQQH 180 LYSHHQFFPS NHQAGAGLGI NSIRGFDMAA GGSGSHGYDA GLLAMNMNVS AAAGIGQLSQ 240 LHQQPTARTA GGDDRRSIDP S* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 3e-66 | LBD family protein |