PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62006536-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | SRS | ||||||||
Protein Properties | Length: 242aa MW: 24289.6 Da PI: 8.6568 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 213.3 | 5.8e-66 | 7 | 180 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..............aeaaskrkrelkskkq 83 sg+ +CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq + ++ + + +++ +k++r +s+++ AUR62006536-RA 7 SGALTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQMMGVPGAAGTHGTGggsvggggggassgSTSGAKKPRLISSQNT 101 78899*********************************************8876655444443336779******99887888899998877777 PP DUF702 84 salsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++s+t++s++ +++++etss lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG e AUR62006536-RA 102 ATTSHTSTSNT-PPRSFETSSshqdasfkdsLPGQVKAPAVFKCVRVTAVDDGEDEFAYQAVVKIGGHVFKGFLYDQGFE 180 77777776666.677888877799******************************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MGCGGGSGAL TCQDCGNQAK KDCSHRRCRT CCRSRGFDCS THVKSTWVPA ARRRERQMMG 60 VPGAAGTHGT GGGSVGGGGG GASSGSTSGA KKPRLISSQN TATTSHTSTS NTPPRSFETS 120 SSHQDASFKD SLPGQVKAPA VFKCVRVTAV DDGEDEFAYQ AVVKIGGHVF KGFLYDQGFE 180 PRDGFPNLSE LHLGGGAAAS SSAGRNGGAS SSSPLLDPSD VYGASGGGGL LGGSSYGNTI 240 N* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 5e-54 | SRS family protein |