PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005812-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

M-type_MADS

Protein Properties

Length: 454aa MW: 50355.1 Da PI: 5.0966

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005812-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.7	4.7e-21	96	139	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en s rq t+skR++gilKKA+ELS+LCd++ a+++fs+ gk AUR62005812-RA 96 KLENASSRQATYSKRKHGILKKAQELSILCDIDLALVMFSPGGK 139 679*************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAEGRKGDSS GRRTRRSQPY PSCHVSDSQQ APETAEDDSE TAQGLGDTQV PDLLTQHEDL 60 SQPWSSGQSE HARGDVVPRL DPGTLWMGKV KLDIKKLENA SSRQATYSKR KHGILKKAQE 120 LSILCDIDLA LVMFSPGGKP SLCCGKHSIE EVIARLNQLP PQERTKRKLE GLEALKKAYR 180 KKSEHDVNIE DFLDSRVGSL ENCFQQDVTD QASRLQTRLA EIHERLWYWT NPDCVSDFGL 240 LMQMEDSLEK SLGQIQREKL KESMQLPFQA NSGQQLQPLL WTPSDSFQHM ALTQEPKLPT 300 QRDIESCTGS TSGSYFGCPS TSSKSEANSP GQLSGIDNIG QDAFQGLQFG GMYSYLPYGL 360 NMPGDSSNLQ AVLGLDQRQN TLVYDAGKNY QQTFPCLDTS NNFLSDTPAD FGFGDLSNYQ 420 KSIVPAPAMP SMYERMTGDS NHLLFDNTPN HNT*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAEGRKGDSS GRRTRRSQPY PSCHVSDSQQ APETAEDDSE TAQGLGDTQV PDLLTQHEDL  60
SQPWSSGQSE HARGDVVPRL DPGTLWMGKV KLDIKKLENA SSRQATYSKR KHGILKKAQE  120
LSILCDIDLA LVMFSPGGKP SLCCGKHSIE EVIARLNQLP PQERTKRKLE GLEALKKAYR  180
KKSEHDVNIE DFLDSRVGSL ENCFQQDVTD QASRLQTRLA EIHERLWYWT NPDCVSDFGL  240
LMQMEDSLEK SLGQIQREKL KESMQLPFQA NSGQQLQPLL WTPSDSFQHM ALTQEPKLPT  300
QRDIESCTGS TSGSYFGCPS TSSKSEANSP GQLSGIDNIG QDAFQGLQFG GMYSYLPYGL  360
NMPGDSSNLQ AVLGLDQRQN TLVYDAGKNY QQTFPCLDTS NNFLSDTPAD FGFGDLSNYQ  420
KSIVPAPAMP SMYERMTGDS NHLLFDNTPN HNT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	2e-65	M-type_MADS family protein