PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005645-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 360aa MW: 38997.6 Da PI: 9.5726

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005645-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4.1e-42	94	170	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p v++ g eqrfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+ AUR62005645-RA 94 CLVDGCKADLSKCRDYHRRHKVCEMHSKTPRVTIGGNEQRFCQQCSRFHPLGEFDEGKRSCRKRLEGHNRRRRKPQP 170 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGYKLTKNYC DLAELKKGGI ATISAIFGSS SFDTEKAIGE RLVDLKLGRL GDFGKGLVNN 60 FKGHSNSIMD PFSPTAGSSK RPRTPGTTSQ VVSCLVDGCK ADLSKCRDYH RRHKVCEMHS 120 KTPRVTIGGN EQRFCQQCSR FHPLGEFDEG KRSCRKRLEG HNRRRRKPQP EPLPVNQGNF 180 FSASQGSRFL AFSNQPIIPA TSVVTTAWSG AVKSESNPTL YNSAAPSSYS QAYRGRQFPF 240 LQVPESPLTG VSSAVIDSDR ALSLLSSNAE TPEMGLGHTF HHPSLVNPTR AMLSSLHYNS 300 VPSQYPGSSQ GHGMEGHPTG SGLFSDLRSS NSLCQDVFQN NTGASSTSGG HQTLSFSWE*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGYKLTKNYC DLAELKKGGI ATISAIFGSS SFDTEKAIGE RLVDLKLGRL GDFGKGLVNN  60
FKGHSNSIMD PFSPTAGSSK RPRTPGTTSQ VVSCLVDGCK ADLSKCRDYH RRHKVCEMHS  120
KTPRVTIGGN EQRFCQQCSR FHPLGEFDEG KRSCRKRLEG HNRRRRKPQP EPLPVNQGNF  180
FSASQGSRFL AFSNQPIIPA TSVVTTAWSG AVKSESNPTL YNSAAPSSYS QAYRGRQFPF  240
LQVPESPLTG VSSAVIDSDR ALSLLSSNAE TPEMGLGHTF HHPSLVNPTR AMLSSLHYNS  300
VPSQYPGSSQ GHGMEGHPTG SGLFSDLRSS NSLCQDVFQN NTGASSTSGG HQTLSFSWE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	168	KRSCRKRLEGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-53	SBP family protein