PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62005644-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28587.5 Da PI: 8.8419 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s AUR62005644-RA 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 93.1 | 4.8e-31 | 96 | 182 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a + s+qqe+ kLk+++e+L r++R+l+GedL++Ls keL++Le+qL+ slk+iRs +++ +++q+ +lq+ke++l+e+n++L+++l AUR62005644-RA 96 ALEISSQQEYLKLKARYESLLRTHRNLMGEDLGPLSSKELESLERQLDMSLKQIRSIRTQCMVDQLTDLQRKEHMLNEANRTLKQRL 182 445689******************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 PSYSIHSLPS SMLKTLEKYQ KSNYGPPDNT VSTREALEIS SQQEYLKLKA RYESLLRTHR 120 NLMGEDLGPL SSKELESLER QLDMSLKQIR SIRTQCMVDQ LTDLQRKEHM LNEANRTLKQ 180 RLIEANQASS LQWGNVQDVG YGRQPAQPHD DTFFHPLDCE PTLQMGYQPD AVNAAAAAGA 240 NANNFLPNWL P* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-100 | MIKC_MADS family protein |