PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005329-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 341aa    MW: 38610.1 Da    PI: 4.2695
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005329-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.9e-151051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +ie ks+r+  f   +++++KKA ELS+LCd+  +vi+f ++
  AUR62005329-RA 10 FIEKKSKRSSCFRLKKQTLFKKARELSILCDVPTCVIVFPPK 51
                    8*************************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGRAKSSNSF IEKKSKRSSC FRLKKQTLFK KARELSILCD VPTCVIVFPP KEDNAKSVEP  60
EVISYYGEEQ HQETQNATNS ELTHTKINRY IACPKDDSYK KRSSNLSDVL GDVNEEKNLI  120
RADDQDLKYN IWSENTNLSD FTQDQLIQLL GNLDNKLDSV TRRMDVIKGV EIDQQKNPLL  180
LDDIFSQSDY DGLLEELLEP YVEDHTRFYN MDQRSGFVDN SLLQSLPMMG SNSSYYDVDQ  240
PSGFIDNCPL QSLLMMGDQG PRFTDGVPLQ CGFPTMGPTY CNQEESGFVD NQSFPMMDRP  300
MYCDQVSGFV DDNLLAVQSY SNDNGYLMMS DISTSAAQLN *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-07MIKC_MADS family protein