PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005159-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 988aa MW: 109538 Da PI: 8.2877

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005159-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	41	75	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++ E e++++a +++G + Wk++a + R+ + AUR62005159-RA 41 QWSKHEIERFYEAYRKHGQD-WKKVATVVR-SRSIDM 75 6***************99.****999.998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence
MAPVKKSKSV RVITSASDSS PSKDEKSKQK KRKLSDMLGP QWSKHEIERF YEAYRKHGQD 60 WKKVATVVRS RSIDMVEALY NMNRAYLSLP EGTASVAGLI AMMTDHYNVL EGSGSEKEIK 120 GPEVMARKIQ KNTKAKGLLD SFRDDSKLQS TGSYDGCLSL LKNRGDGIQL NFPVRKRTPR 180 VPVSCLDIHP NKKSRVSGKI ANDTGVPYGD LRPKEAWCNP NSPHGSQTMY RKNECTRTSQ 240 VSAREEVMSR SPVLKVRTGG FAADRDFKEC SLGYNEAKTE NWARDRHSET TLFDNIREAY 300 KYADKGPRRI GSDGKSADIC RSTSEGQSRG KKLTFEDELA ACDALQTLAE MSSMMPFIAA 360 EPAEDAGDSV LVRETVVNSV ACSNIALSDE KASVELKKKR KSQALKVPKA EFPNDFSKKP 420 TEDESVADED VKSGNSSGQI SVVSKNCKSL VRSPDVSSSN DPHTGEAEVA VSSAHVHHAS 480 QVVNPTGRKR RRKRDRTFLL KDKNYTPSCS SDSLSVPHER LQDVKGKLLH CLSWHEVRRW 540 CVYEWFYSAI DYPWFAKREF VEYLDHVGLG HIPRLTRFEL GVIRSSLGKP RRFSERFLQE 600 ERKKLNQYRE SVRTQYANLR AGLGEGLPTD LACPLYVGQK VVAIHPKTRE CHNGSVLTVD 660 RDNCMVQFHH PDLGVELVMD IDCMPLNLLE NMPEDLKRQN MLFDYRCVQV PKINGANFSA 720 LEEYNKSVNH HIRVPSFSPS VAADMKAKPA CLSAYAKVVG SGSFQIPSAT QSKSYNMAQL 780 HLQEGHLRFI PGLTGGLDQK SCSESLPSWP HPTTESVGLN GNMPSLNNSG ISCQETASNV 840 AEIVEVSKDK AQKMVDTATK AISSIEEGED AFGRIRKALD ASGKSERVTN CRASMIPSSN 900 AVRGSLPHQN PLTSCASEAP LSCDAFTEQP TDHSVSNDLQ IPSDLITSCV ATWLMIQTCT 960 ERQYPPAEVA QILDDAVTEL SEMFSEA*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence

MAPVKKSKSV RVITSASDSS PSKDEKSKQK KRKLSDMLGP QWSKHEIERF YEAYRKHGQD  60
WKKVATVVRS RSIDMVEALY NMNRAYLSLP EGTASVAGLI AMMTDHYNVL EGSGSEKEIK  120
GPEVMARKIQ KNTKAKGLLD SFRDDSKLQS TGSYDGCLSL LKNRGDGIQL NFPVRKRTPR  180
VPVSCLDIHP NKKSRVSGKI ANDTGVPYGD LRPKEAWCNP NSPHGSQTMY RKNECTRTSQ  240
VSAREEVMSR SPVLKVRTGG FAADRDFKEC SLGYNEAKTE NWARDRHSET TLFDNIREAY  300
KYADKGPRRI GSDGKSADIC RSTSEGQSRG KKLTFEDELA ACDALQTLAE MSSMMPFIAA  360
EPAEDAGDSV LVRETVVNSV ACSNIALSDE KASVELKKKR KSQALKVPKA EFPNDFSKKP  420
TEDESVADED VKSGNSSGQI SVVSKNCKSL VRSPDVSSSN DPHTGEAEVA VSSAHVHHAS  480
QVVNPTGRKR RRKRDRTFLL KDKNYTPSCS SDSLSVPHER LQDVKGKLLH CLSWHEVRRW  540
CVYEWFYSAI DYPWFAKREF VEYLDHVGLG HIPRLTRFEL GVIRSSLGKP RRFSERFLQE  600
ERKKLNQYRE SVRTQYANLR AGLGEGLPTD LACPLYVGQK VVAIHPKTRE CHNGSVLTVD  660
RDNCMVQFHH PDLGVELVMD IDCMPLNLLE NMPEDLKRQN MLFDYRCVQV PKINGANFSA  720
LEEYNKSVNH HIRVPSFSPS VAADMKAKPA CLSAYAKVVG SGSFQIPSAT QSKSYNMAQL  780
HLQEGHLRFI PGLTGGLDQK SCSESLPSWP HPTTESVGLN GNMPSLNNSG ISCQETASNV  840
AEIVEVSKDK AQKMVDTATK AISSIEEGED AFGRIRKALD ASGKSERVTN CRASMIPSSN  900
AVRGSLPHQN PLTSCASEAP LSCDAFTEQP TDHSVSNDLQ IPSDLITSCV ATWLMIQTCT  960
ERQYPPAEVA QILDDAVTEL SEMFSEA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	488	492	RKRRR
2	488	494	RKRRRKR
3	488	495	RKRRRKRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-135	MYB_related family protein