PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005153-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 274aa    MW: 29690.3 Da    PI: 8.4298
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005153-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-0894115526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ ++r+G C+ Gd C FaHg
  AUR62005153-RA  94 VCPEYRRSGSCSQGDECDFAHG 115
                     7********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGSVCAEHHH HYKFHSLISP KKALQDLNIP PRKLLSRRSD ASSASSSDYF SPSSEAATAM  60
LHNRSHDWTD CPFSHPGEKA RRRDPRRFHY SGTVCPEYRR SGSCSQGDEC DFAHGVFECW  120
LHPARYRTEA CKDGKSCKRK VCFFAHSPRE LRVLPAEEDG DEKDGLSNFS PPMSPMKAVG  180
ARPLSRYSDR VSACGSKGLS YEDMVIAELL GSLEADSAAE LLTDEAVAAA GKARPGLCTA  240
EGLRSVLSGL GGSRASSPTC KMASKSSKKS TST*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-58C3H family protein