PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62005080-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | NF-YC | ||||||||
Protein Properties | Length: 250aa MW: 27509.3 Da PI: 6.0023 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.5 | 6.2e-56 | 69 | 172 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl AUR62005080-RA 69 QLQSFWQNQyqdIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 163 89******9999*********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l AUR62005080-RA 164 VDIVPREDL 172 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MDQQGHGQAP VVGTVSGAGQ VPYVGAYQPN QVTGAPVHGS AQPSGAQMAQ HQLAYXXXXX 60 XXXXXXQQQL QSFWQNQYQD IEKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVVFAR 120 ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDDVLATL 180 PRGTGMPVAG PTDALPYYFM PPAQNPAQAG PPGVMMGNPN AYAAQSQPYM GQPMWPQQPP 240 QRQQSSSDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 5e-69 | NF-YC family protein |