PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62004973-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 52903.8 Da PI: 6.5977 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 52 | 67 | 12 | 27 |
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tGtCk+G +C+F+H+p AUR62004973-RA 52 TGTCKFGQNCRFNHPP 67 8*************97 PP | |||||||
2 | zf-CCCH | 33.7 | 6e-11 | 134 | 156 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++rtG C yG +C+F+H+ AUR62004973-RA 134 QECTFYLRTGSCGYGVNCRFHHP 156 68********************9 PP | |||||||
3 | zf-CCCH | 34.6 | 3.2e-11 | 280 | 305 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++tG Cky + C+++H+ AUR62004973-RA 280 PGQPDCDFFMKTGDCKYRAACRYNHP 305 5789*********************9 PP | |||||||
4 | zf-CCCH | 25.8 | 1.8e-08 | 360 | 386 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ + C+++H++ AUR62004973-RA 360 PGQPECEFFMKTGNCKFKSACRYHHPR 386 5789*********************96 PP | |||||||
5 | zf-CCCH | 27.2 | 6.8e-09 | 408 | 431 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + Cr++ GtCkyG +C F+H+ AUR62004973-RA 408 SKVCRNYELQGTCKYGRNCLFHHP 431 678********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MGTCEEISSS IEIQNEIKLG ISPSGTHWDE QVTEEELLAQ QFESVVLQGN GTGTCKFGQN 60 CRFNHPPEKG FKVALDQEKG IEENNGTFVD PGKIDCKGGC KYGDACRYNH SAQKVENEGP 120 ELNFLGLPVR PSEQECTFYL RTGSCGYGVN CRFHHPDPIA SKESEARNSL GNGVYARGGN 180 NFSGMYVGDP LQTSGVARGI PDLANGLSSM NGLPYAEMSS YHQALPQNAR WNQDQAQVNL 240 SLSAKKTPLP HQIVNNLSKK ADPTTHYEHL LQSEEFPLRP GQPDCDFFMK TGDCKYRAAC 300 RYNHPVSQES KLRLPLLSSK GLYSKSKNPE LPNLNPGNPR KNGTSHQQQQ MQNGQYPERP 360 GQPECEFFMK TGNCKFKSAC RYHHPRDRMS TSSSCALNES GLPLRPGSKV CRNYELQGTC 420 KYGRNCLFHH PDNSSPAISA APIPPVADQD HSSPNPEVAT NLESPAGDNV ESDWGDGWVM 480 * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 6e-60 | C3H family protein |