PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003850-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

M-type_MADS

Protein Properties

Length: 886aa MW: 99066.9 Da PI: 8.3652

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003850-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.2	8.1e-17	10	48	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i + r+ t+ kR++g+lKKA+ELS+LC++ v++ii+ AUR62003850-RA 10 FIVKEKTRNATYGKRKKGLLKKAHELSILCNVPVCIIIY 48 5666778999****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence
MGRAKIAMEF IVKEKTRNAT YGKRKKGLLK KAHELSILCN VPVCIIIYPY KEGKQSSEAE 60 VYAFKGDLIT ESNAMDLSRA TDPMVAREMI DRYVRIPNEE KYKRALNLFD MFDEWTKKAD 120 QELSKLRHKN ALVKYPCGGS SSSHQMGGTR MDDQGGSSSR GSSLMYNMNS MPGVVPVYYD 180 QGRGFVDNFG ATSSYGAGLT MSMPLQSMPM LPNASLQRQR QYHQMYYKQI LGVILAPISV 240 KRMVSVEQQV KDLELRLGEQ QKVSSVFQDR VLKMMQDLSA KLDEVSPNTP VSTPKTPELG 300 SNSTRTLGYV PKLKFPKFDG HNCRLWIKKC NKYFKLCKIN DEQKVDLASL NMIDKAEPAV 360 KPFVKAFKPQ TLADAVEFAR LQEESLEASK NMGESYTTYG AKNTISSSSL EPSTTNSGAL 420 VPFQSSKPLH KPQITLTAAE RREKQLKGLC YFCDQPYERN HKCPLKQTQL FIVEIPGEDE 480 CEEEGMVESV QDLDSTMESI DPQISVHALC GNPSFQIMRV TGVCGKSPLH VLIDSGSTHN 540 FLDIDVARRL GCKIDSISPQ AVTVADGNHL ACQNVCKGFK WSIQGNEFVS DVLLLSLGSC 600 DMVLGIQWLS MLGTKSKKAV ATVGQKVDKV FNQPSQLYFL QLIPDNSDID LFCLKTEVTE 660 IPSSMNNLIP LEFGADPVSI RPYRYPLSQR DTIEKLVKEM LEQVQKWEQY LTGHQFIIKI 720 DQKSLKWLLQ QKISTPFQQL WLSKLMGFNY ENVYRSGSEN VVADALSRVS GSEILLLALT 780 VLDSNLSQKL KDSYELDVNT ARIFRDVQLG PDDDLKAAIL SWLHSSGQSG HSGKDATLVR 840 VKGMFYWKGM TAYVSNFVRN CLVCQASKSE NVASPGLLQP LPIPS*

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence

MGRAKIAMEF IVKEKTRNAT YGKRKKGLLK KAHELSILCN VPVCIIIYPY KEGKQSSEAE  60
VYAFKGDLIT ESNAMDLSRA TDPMVAREMI DRYVRIPNEE KYKRALNLFD MFDEWTKKAD  120
QELSKLRHKN ALVKYPCGGS SSSHQMGGTR MDDQGGSSSR GSSLMYNMNS MPGVVPVYYD  180
QGRGFVDNFG ATSSYGAGLT MSMPLQSMPM LPNASLQRQR QYHQMYYKQI LGVILAPISV  240
KRMVSVEQQV KDLELRLGEQ QKVSSVFQDR VLKMMQDLSA KLDEVSPNTP VSTPKTPELG  300
SNSTRTLGYV PKLKFPKFDG HNCRLWIKKC NKYFKLCKIN DEQKVDLASL NMIDKAEPAV  360
KPFVKAFKPQ TLADAVEFAR LQEESLEASK NMGESYTTYG AKNTISSSSL EPSTTNSGAL  420
VPFQSSKPLH KPQITLTAAE RREKQLKGLC YFCDQPYERN HKCPLKQTQL FIVEIPGEDE  480
CEEEGMVESV QDLDSTMESI DPQISVHALC GNPSFQIMRV TGVCGKSPLH VLIDSGSTHN  540
FLDIDVARRL GCKIDSISPQ AVTVADGNHL ACQNVCKGFK WSIQGNEFVS DVLLLSLGSC  600
DMVLGIQWLS MLGTKSKKAV ATVGQKVDKV FNQPSQLYFL QLIPDNSDID LFCLKTEVTE  660
IPSSMNNLIP LEFGADPVSI RPYRYPLSQR DTIEKLVKEM LEQVQKWEQY LTGHQFIIKI  720
DQKSLKWLLQ QKISTPFQQL WLSKLMGFNY ENVYRSGSEN VVADALSRVS GSEILLLALT  780
VLDSNLSQKL KDSYELDVNT ARIFRDVQLG PDDDLKAAIL SWLHSSGQSG HSGKDATLVR  840
VKGMFYWKGM TAYVSNFVRN CLVCQASKSE NVASPGLLQP LPIPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	26	KEKTRNATYGKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	2e-12	M-type_MADS family protein