PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003712-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 24438.6 Da PI: 8.4516

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003712-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	6e-20	48	102	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F ++++ e++ +LA++l+L+ rqV vWFqNrRa++k+ AUR62003712-RA 48 KKRKLSEEQVNMLEMSFGCEHKLESERKDRLASELNLDPRQVAVWFQNRRARWKN 102 56699************************************************95 PP
2	HD-ZIP_I/II	119.6	1.6e-38	48	139	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv++LE+sF e+kLe+erK +la+eL+l+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ e++rLe+ev +L+e+l++ AUR62003712-RA 48 KKRKLSEEQVNMLEMSFGCEHKLESERKDRLASELNLDPRQVAVWFQNRRARWKNKKLEHEYSKLKNEHEKTIVEKCRLETEVLSLKEQLSN 139 9***************************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MQGEDNPVGL IPQLYSGIYN QMAPQQGDPP KRRRRRKNKG DGSSLAAKKR KLSEEQVNML 60 EMSFGCEHKL ESERKDRLAS ELNLDPRQVA VWFQNRRARW KNKKLEHEYS KLKNEHEKTI 120 VEKCRLETEV LSLKEQLSNA QKEMQKLVDR SSTSSSAISS NSPSSSLTMD QHPNVVDPQL 180 LEEQIGIGGC FDSMFYVPDT NYGASMDWAA GLYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRRRRR
2	31	37	KRRRRRK
3	31	51	KRRRRRKNKGDGSSLAAKKRK
4	32	52	KRRRRRKNKGDGSSLAAKKRK
5	33	53	KRRRRRKNKGDGSSLAAKKRK
6	34	54	KRRRRRKNKGDGSSLAAKKRK
7	35	55	KRRRRRKNKGDGSSLAAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-57	HD-ZIP family protein