PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003672-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 446aa MW: 48087 Da PI: 7.588

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003672-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.9	1.6e-10	152	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +e+Aa+ ++ a++k++g AUR62003672-RA 152 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARSYDLAALKYWG 208 57*****************4444.2344336655.779999************98 PP
2	AP2	50.1	7.1e-16	251	302	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g AUR62003672-RA 251 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 302 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MAPAAATSNS NWLSFSLSPM EMLASSHQTH NPQIPINSPS PHHYFLDPFY TTGGYQGAFS 60 GTSGSEVDDS AATHLGAEFL GHSIESTHTD LVPSFGGGAA TTTTNNNSNS NNGGNLSLSV 120 VPQTTDKSIV TVAADSDNSI KKISDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ 180 ARKGRQGGYD KEEKAARSYD LAALKYWGPT ATTNFPISNY STELEDMKHV TKQEFIASLR 240 RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF 300 RGVNAVTNFE MNRYDVEAIL KSNLPIGGAA KRLKLATEAA DQKPTLSLDQ QSHSSNGSSG 360 GTSSTINFAA IQSVPPISCA VPYDAATAIF HQNLFHHLNS NGGSHQAVAS PEAYGSGVGM 420 SSVAPMMSLM PQTPAEFYIW PHQSY*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MAPAAATSNS NWLSFSLSPM EMLASSHQTH NPQIPINSPS PHHYFLDPFY TTGGYQGAFS  60
GTSGSEVDDS AATHLGAEFL GHSIESTHTD LVPSFGGGAA TTTTNNNSNS NNGGNLSLSV  120
VPQTTDKSIV TVAADSDNSI KKISDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  180
ARKGRQGGYD KEEKAARSYD LAALKYWGPT ATTNFPISNY STELEDMKHV TKQEFIASLR  240
RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF  300
RGVNAVTNFE MNRYDVEAIL KSNLPIGGAA KRLKLATEAA DQKPTLSLDQ QSHSSNGSSG  360
GTSSTINFAA IQSVPPISCA VPYDAATAIF HQNLFHHLNS NGGSHQAVAS PEAYGSGVGM  420
SSVAPMMSLM PQTPAEFYIW PHQSY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-143	AP2 family protein