PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003425-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 350aa MW: 38422.8 Da PI: 8.4877

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003425-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	98	175	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dl++++eyhrrhkvCe hsk+pvvlv g+eqrfCqqCsrfh+l+efDe krsCr+rL++hn+rrrk+q+ AUR62003425-RA 98 ICSVDGCASDLNQCREYHRRHKVCERHSKTPVVLVGGKEQRFCQQCSRFHSLEEFDEVKRSCRKRLDGHNRRRRKRQP 175 5**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MEWDSKSCAW NGVSKVEFQD NGYHHHLATL AGSSGTGISN MFSVDLKLGR LGDMRDLSMD 60 TLKNSMPLNM ASSSSPSPVL ALSKRGRPRN SGAQSTVICS VDGCASDLNQ CREYHRRHKV 120 CERHSKTPVV LVGGKEQRFC QQCSRFHSLE EFDEVKRSCR KRLDGHNRRR RKRQPETFYM 180 PDSAGGVLSS HTADGMLQYS CPQMHTVNWP TMSQQPDLYF QNNQETIYQP LLNDVAPTGS 240 RRGGLKVSPD NSGCALSLLS RYSSQSSDIR VGPAMQPTVM SSATAQGSST SLHLNNSYQL 300 PCSQGLDDIE SSASLSSSSN TNAPNIGGFH TGHAGYRENS SRIFPFGWE*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MEWDSKSCAW NGVSKVEFQD NGYHHHLATL AGSSGTGISN MFSVDLKLGR LGDMRDLSMD  60
TLKNSMPLNM ASSSSPSPVL ALSKRGRPRN SGAQSTVICS VDGCASDLNQ CREYHRRHKV  120
CERHSKTPVV LVGGKEQRFC QQCSRFHSLE EFDEVKRSCR KRLDGHNRRR RKRQPETFYM  180
PDSAGGVLSS HTADGMLQYS CPQMHTVNWP TMSQQPDLYF QNNQETIYQP LLNDVAPTGS  240
RRGGLKVSPD NSGCALSLLS RYSSQSSDIR VGPAMQPTVM SSATAQGSST SLHLNNSYQL  300
PCSQGLDDIE SSASLSSSSN TNAPNIGGFH TGHAGYRENS SRIFPFGWE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-41	SBP family protein