PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62003076-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | YABBY | ||||||||
Protein Properties | Length: 162aa MW: 18089.7 Da PI: 8.5028 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 127.8 | 1.5e-39 | 18 | 162 | 6 | 159 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +e++Cyv+CnfCnt++ +P + l+ ++tv+CGhC+++ ++ + q + +++ ++ + l++ + +++ + ++s+++s++s + AUR62003076-RA 18 PPEHLCYVRCNFCNTVV---IPCKRLLDTITVKCGHCSNVSFLSTRPPLQGQCLDHQITLQGFNF----LEKPGGFCSTID--HHSNKKSEPSPS 103 68*************76...7******************98766666665555444443333332....222233333333..333333333433 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s+ +e v+ p v +PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aakn AUR62003076-RA 104 SSSTLTEPVSPRPFVCKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKN 162 344445555555779*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MNTNTMEDKV GSELAPPPPE HLCYVRCNFC NTVVIPCKRL LDTITVKCGH CSNVSFLSTR 60 PPLQGQCLDH QITLQGFNFL EKPGGFCSTI DHHSNKKSEP SPSSSSTLTE PVSPRPFVCK 120 PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSTAA KN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 6e-48 | YABBY family protein |