PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003075-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 500aa MW: 55390.3 Da PI: 6.2906

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003075-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.3	2.9e-40	205	280	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+y++rhkvC+vh+k+p+v+v+g+eqrfCqqCsrfh l efD+ krsCrrrL+ hn+rrrk+q AUR62003075-RA 205 CQVLGCNKDLSSFKSYYKRHKVCDVHTKTPKVIVDGIEQRFCQQCSRFHLLAEFDDIKRSCRRRLSAHNKRRRKPQ 280 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MFASSVERRW HFLGVEEMGV LLRLVEISML ALPSWCVEGE EMVFLGVEDM CCTHEHCVWE 60 SKGCFVRVGA WSIVMDSWKH MGCEIKTMFN VESYPLISNT QALERMDFMD LGFPDDIRKS 120 YSISSEPSGE VFSDEIGTDY PQFGEESNHQ QDFSLVDLKL GRLEDGGIDK DSELSKINAA 180 ESSVMLSSPA KKARSSMSIN RSSNCQVLGC NKDLSSFKSY YKRHKVCDVH TKTPKVIVDG 240 IEQRFCQQCS RFHLLAEFDD IKRSCRRRLS AHNKRRRKPQ LASEPGSGII DFSSSLAFPE 300 VMPSVYLGPS KYEEGIDNSI KSSNFLLQMG CVGEKINKFP ANVKDDIAGF AKPTNETLSS 360 IQQTSRALSL LSAQSHSISS QLLETASATL TNRGNHADSN PGHSLNHSAG IFNKVSASGP 420 HEPGIYSMDA DEDGPTMINH NNSNTVGLHL PSDGISRPGL RNTDCHHPKE RGIILNLLQL 480 SSNLQRVEQQ KHSTENEAG*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MFASSVERRW HFLGVEEMGV LLRLVEISML ALPSWCVEGE EMVFLGVEDM CCTHEHCVWE  60
SKGCFVRVGA WSIVMDSWKH MGCEIKTMFN VESYPLISNT QALERMDFMD LGFPDDIRKS  120
YSISSEPSGE VFSDEIGTDY PQFGEESNHQ QDFSLVDLKL GRLEDGGIDK DSELSKINAA  180
ESSVMLSSPA KKARSSMSIN RSSNCQVLGC NKDLSSFKSY YKRHKVCDVH TKTPKVIVDG  240
IEQRFCQQCS RFHLLAEFDD IKRSCRRRLS AHNKRRRKPQ LASEPGSGII DFSSSLAFPE  300
VMPSVYLGPS KYEEGIDNSI KSSNFLLQMG CVGEKINKFP ANVKDDIAGF AKPTNETLSS  360
IQQTSRALSL LSAQSHSISS QLLETASATL TNRGNHADSN PGHSLNHSAG IFNKVSASGP  420
HEPGIYSMDA DEDGPTMINH NNSNTVGLHL PSDGISRPGL RNTDCHHPKE RGIILNLLQL  480
SSNLQRVEQQ KHSTENEAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	279	KRSCRRRLSAHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-40	SBP family protein