PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002783-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 347aa    MW: 38503.9 Da    PI: 7.5251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002783-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.3e-14269294126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++t tC+yGd C+FaHg
  AUR62002783-RA 269 FKTELCNKWQETKTCPYGDHCQFAHG 294
                     79***********************8 PP

2zf-CCCH17.95.6e-06307331125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ykte Cr  +++  C+yG rC+F H
  AUR62002783-RA 307 YKTEVCRMVLAGDPCPYGHRCHFRH 331
                     9**********55**********88 PP

Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MQQDNSASSN MMSSAGDMFT PPPYSIFFHS ATSPTSFNST PVNSDGNSGR NTDNISAIAL  60
RSLSRIMAEH KELLSRHSVC LAQLQKTFNE AETLRQENTN LRLENLELSN QLDLLIEDSL  120
QSRYLAMPFS DYPEQFGSSS LSAAAEKLGG GNGSSNGSFQ KERVSGDWDE GFCSNNQNRP  180
TVNEKSQKED WKEENARVAL PKSISVRSNG FVKMNQIAAG STQKDSTPAR SVTPLRSSGK  240
VSGPQKVYVR GGSNKNGPIE LEVYNQGMFK TELCNKWQET KTCPYGDHCQ FAHGIEELRP  300
VIRHPRYKTE VCRMVLAGDP CPYGHRCHFR HALTDEEKLM HSPRLN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-68C3H family protein