PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62002783-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 347aa MW: 38503.9 Da PI: 7.5251 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 43.8 | 4.3e-14 | 269 | 294 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++t tC+yGd C+FaHg AUR62002783-RA 269 FKTELCNKWQETKTCPYGDHCQFAHG 294 79***********************8 PP | |||||||
2 | zf-CCCH | 17.9 | 5.6e-06 | 307 | 331 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H AUR62002783-RA 307 YKTEVCRMVLAGDPCPYGHRCHFRH 331 9**********55**********88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MQQDNSASSN MMSSAGDMFT PPPYSIFFHS ATSPTSFNST PVNSDGNSGR NTDNISAIAL 60 RSLSRIMAEH KELLSRHSVC LAQLQKTFNE AETLRQENTN LRLENLELSN QLDLLIEDSL 120 QSRYLAMPFS DYPEQFGSSS LSAAAEKLGG GNGSSNGSFQ KERVSGDWDE GFCSNNQNRP 180 TVNEKSQKED WKEENARVAL PKSISVRSNG FVKMNQIAAG STQKDSTPAR SVTPLRSSGK 240 VSGPQKVYVR GGSNKNGPIE LEVYNQGMFK TELCNKWQET KTCPYGDHCQ FAHGIEELRP 300 VIRHPRYKTE VCRMVLAGDP CPYGHRCHFR HALTDEEKLM HSPRLN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-68 | C3H family protein |