PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62002563-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 979aa MW: 108455 Da PI: 6.8782

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62002563-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.9	2.2e-41	151	227	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+ak+yhrrhkvCevhsk ++++v ++ qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk+ AUR62002563-RA 151 ACQVEGCTADLSNAKDYHRRHKVCEVHSKVSEAFVGNVIQRFCQQCSRFHALPEFDEGKRSCRRRLAGHNKRRRKTL 227 5*************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence
MEAEMGGKTD VYCSAVMPVS DPKAVGKKTL EWDLNDWKWD GDLFLAAPLN TTHTPLDCRS 60 KQLFPLGPEL ASNNNVGSEE SNKTNEKEKR EMEKRRRVVV VPHEELNDEG RPLNLKLGEQ 120 VYPIAEDEAD KLEGKSVKKS KSAGTGTSQP ACQVEGCTAD LSNAKDYHRR HKVCEVHSKV 180 SEAFVGNVIQ RFCQQCSRFH ALPEFDEGKR SCRRRLAGHN KRRRKTLPET SPNVGSLTDE 240 KSSGYLLVSL LRILSNLHSN GSDETKDQDL ISHLLRNLAS QVSGSNLPEL QQGSQSLHNA 300 GISIGVPEKN PSSAQELCQA VPSAEARIGL LTRENQHQKE KTQCASQPGI FHPTDGSIAT 360 KGSVPGAYLG IDLNNVYDDS QECVDIPGNG HGSIACAFRS EHLQKSSLPQ TSGNSDSNSG 420 HSSSSGSDSQ GRTDRIVFKL FGKDPNDLPN QLRTQILDWL SHKPSDIEGY IRPGCIVLTV 480 YLRLNKSLWE ELCYDMSSSL SRLLSLSDDP FWKTGWIYTR VQQSAAFICD GRVVLDTPLP 540 FKSRGSRISS ISPIAVPTAE TVQLVVKGSN LSGPTSRLLC AIEGKYLVQD SCYSLVESTA 600 AEHNEIQSLS FHCSIPNVVG RGFIEVEDYG LSGCFFPFIV AEPEICSEIC MLERVMEIAG 660 TDEGIERRND ALEFIHEMGW LLHTNRLSSM SGQTNIHLDL FPFVRLKWLI DYSINHDWCA 720 VLRKLLDLLF SGIVDTGNHA SVENALSEIS LLHTAVQRNS RSMVEFLLRY IPKKVKNTIG 780 LEQKQSHYVL PSSFLFRPDV TGSNGLTPLH LAASCAGFEN MLDALLEDPG MVGIGAWENA 840 RDSTGLTPKD YAYLRGHNHY IDLFQSKVNK NSSGKHVVVD ILGLSNLEYK QKPSDELKLA 900 KFNSLYTEKR QISQNCKLCE QRPNYGFRGT SLTCRPVVMS LVTIAVVCVC TALLFKSMPR 960 VCYVFVPFRW DSLKYGAM*

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence

MEAEMGGKTD VYCSAVMPVS DPKAVGKKTL EWDLNDWKWD GDLFLAAPLN TTHTPLDCRS  60
KQLFPLGPEL ASNNNVGSEE SNKTNEKEKR EMEKRRRVVV VPHEELNDEG RPLNLKLGEQ  120
VYPIAEDEAD KLEGKSVKKS KSAGTGTSQP ACQVEGCTAD LSNAKDYHRR HKVCEVHSKV  180
SEAFVGNVIQ RFCQQCSRFH ALPEFDEGKR SCRRRLAGHN KRRRKTLPET SPNVGSLTDE  240
KSSGYLLVSL LRILSNLHSN GSDETKDQDL ISHLLRNLAS QVSGSNLPEL QQGSQSLHNA  300
GISIGVPEKN PSSAQELCQA VPSAEARIGL LTRENQHQKE KTQCASQPGI FHPTDGSIAT  360
KGSVPGAYLG IDLNNVYDDS QECVDIPGNG HGSIACAFRS EHLQKSSLPQ TSGNSDSNSG  420
HSSSSGSDSQ GRTDRIVFKL FGKDPNDLPN QLRTQILDWL SHKPSDIEGY IRPGCIVLTV  480
YLRLNKSLWE ELCYDMSSSL SRLLSLSDDP FWKTGWIYTR VQQSAAFICD GRVVLDTPLP  540
FKSRGSRISS ISPIAVPTAE TVQLVVKGSN LSGPTSRLLC AIEGKYLVQD SCYSLVESTA  600
AEHNEIQSLS FHCSIPNVVG RGFIEVEDYG LSGCFFPFIV AEPEICSEIC MLERVMEIAG  660
TDEGIERRND ALEFIHEMGW LLHTNRLSSM SGQTNIHLDL FPFVRLKWLI DYSINHDWCA  720
VLRKLLDLLF SGIVDTGNHA SVENALSEIS LLHTAVQRNS RSMVEFLLRY IPKKVKNTIG  780
LEQKQSHYVL PSSFLFRPDV TGSNGLTPLH LAASCAGFEN MLDALLEDPG MVGIGAWENA  840
RDSTGLTPKD YAYLRGHNHY IDLFQSKVNK NSSGKHVVVD ILGLSNLEYK QKPSDELKLA  900
KFNSLYTEKR QISQNCKLCE QRPNYGFRGT SLTCRPVVMS LVTIAVVCVC TALLFKSMPR  960
VCYVFVPFRW DSLKYGAM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	98	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein