PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62002530-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 11752.5 Da PI: 9.816 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.1 | 2e-17 | 10 | 54 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien+s r vt+ kR + + KK ELSvLC+++++ ii++++ ++ AUR62002530-RA 10 YIENDSSRRVTYQKRVKNLVKKTRELSVLCGVDACAIIYGQDEQV 54 59***************************************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence |
MVRKKAKLAY IENDSSRRVT YQKRVKNLVK KTRELSVLCG VDACAIIYGQ DEQVPVVWPS 60 SEEEAKRIIS YYNSKSDLDP SQRGFNQYTF LNDSVIKAKG KGC* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 7e-22 | M-type_MADS family protein |