PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62002526-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10438.1 Da PI: 9.8849 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.1 | 3.1e-20 | 10 | 54 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +ien++ r+ t+skR +g+ KK +ELSvLCd++++vii++++ ++ AUR62002526-RA 10 FIENNTARKATLSKRTHGLVKKTQELSVLCDVDACVIIYAKDTQV 54 8***************************************98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence |
MTRKKVKLAF IENNTARKAT LSKRTHGLVK KTQELSVLCD VDACVIIYAK DTQVPVVWPS 60 SDPEVRRIIA KYQDNPDMYQ LERRLDQQSF * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-22 | M-type_MADS family protein |