PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62002244-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 163aa MW: 18402.2 Da PI: 9.8155 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 44 | 65 | 6 | 26 |
-SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 6 CrffartG.tCkyGdrCkFaHg 26 C++++++ C++G+ C +aHg AUR62002244-RA 44 CPDYRASSgNCPRGELCEYAHG 65 777777666************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence |
MYSFKVKRCP LMRAHDWTIC PYAHQGERAR RRDLKKVLYV AVSCPDYRAS SGNCPRGELC 60 EYAHGVFEYW LHPTKYRTRF CNAGNRCTRP ICFFAHSLKQ LRAEPMAHIP KWVRLALRTQ 120 QLDLQAPPVK PSLSATSAAT RISSTSGGRE DGCYAGCSLA FN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 7e-46 | C3H family protein |