PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001901-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 453aa MW: 50049.3 Da PI: 9.074

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001901-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.9e-17	128	177	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g AUR62001901-RA 128 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 177 78*****************......55**********************997 PP
2	AP2	43.1	1e-13	220	270	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g AUR62001901-RA 220 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 270 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MWDLNGSPDE ITRAAARGGG YPESEGGSSQ KTTSFDGDDK NSTSSAVVID DSGERSDGDD 60 PGGDRKKHVA GSSAGNFSKP AHWDGTKLYP TSDTMAAATL MGPTGVAKPT ELAQPMKKSR 120 RGPRSRSSQY RGVTYYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA 180 DINFTLEDYQ DDLKQMGNLT KEEFVHILRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF 240 LGKKYVYLGL FDTEVEAARA YDKAAIKCNG KDAVTNFDPS IYEEELKATG SSSSRKNAGL 300 DFRDSNPAML EQQQQQYPSS MQLELNWQNQ GSRPKDAYQD HAETMQLLSQ TRLQSSPTSL 360 QPKEMSSMHN RYAGQMPVFV PPHLNSSNYH HHQIQFPSSS NGGRIDLMLS SSSANINNIN 420 SNSSSGFSQQ ISRPPPNWMP PNNGFHPLMR PS*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MWDLNGSPDE ITRAAARGGG YPESEGGSSQ KTTSFDGDDK NSTSSAVVID DSGERSDGDD  60
PGGDRKKHVA GSSAGNFSKP AHWDGTKLYP TSDTMAAATL MGPTGVAKPT ELAQPMKKSR  120
RGPRSRSSQY RGVTYYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA  180
DINFTLEDYQ DDLKQMGNLT KEEFVHILRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF  240
LGKKYVYLGL FDTEVEAARA YDKAAIKCNG KDAVTNFDPS IYEEELKATG SSSSRKNAGL  300
DFRDSNPAML EQQQQQYPSS MQLELNWQNQ GSRPKDAYQD HAETMQLLSQ TRLQSSPTSL  360
QPKEMSSMHN RYAGQMPVFV PPHLNSSNYH HHQIQFPSSS NGGRIDLMLS SSSANINNIN  420
SNSSSGFSQQ ISRPPPNWMP PNNGFHPLMR PS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	4e-97	AP2 family protein