PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001633-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 659aa MW: 71441.9 Da PI: 6.2541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001633-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.2e-08	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg AUR62001633-RA 280 PCPEFRK-GSCPKGDACEYAHG 300 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MCSGSKSKVL TAKEVMESED YKKDSIGDQQ KSVLLLELSA TNDLTSFKDA VEKEGYDVDE 60 AGLWYGRRVG SKKMGFEERT PLMVAAMFGS KEILNYILQT GCVDVNRASG SDGATALHCA 120 AAGGSLYSHE VIKLLVESSS DVDRVDVNGN RPCDVIAPCF SFSSKLKRRT LDILLNKGDQ 180 GEDACGDQIE EGQQQQQLEG LSPKSSSDGS GSERKEYPID PSLPDIKNGI YGTDEFRMYT 240 FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCP KGDACEYAHG 300 IFECWLHPAQ YRTRLCKDET NCARRVCFFA HKPEELRPLY ASTGSAVPSP RSYSSSGPSF 360 DMASLSPLAL GSPPVMMPST STPPMTPTGA SSPIGGAAAW QNHLNITPPP ALQLPGSRLK 420 AALSARDMDM ESGLRRQQLL DELSGLSLSS PSNWNGEMGR LGGFSLSSPT GVQMRQNMNQ 480 QLLSSYSSGM PSSPVRGSSF GIEPSGSPVS NPRLAAFAKR SQSFVERNAV NRLSGGLSSP 540 ASNASVMPSH LSDWGSPDGK VDWGVQGDEL NKLRKSASFA YRSNGSNTAG NTNSIRAAGD 600 EPDVSWVHSL VKDAPPGSSN QLGFEEQLRD QYHLNSGLSE RIPPWVEQLY MEQEPMAA*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MCSGSKSKVL TAKEVMESED YKKDSIGDQQ KSVLLLELSA TNDLTSFKDA VEKEGYDVDE  60
AGLWYGRRVG SKKMGFEERT PLMVAAMFGS KEILNYILQT GCVDVNRASG SDGATALHCA  120
AAGGSLYSHE VIKLLVESSS DVDRVDVNGN RPCDVIAPCF SFSSKLKRRT LDILLNKGDQ  180
GEDACGDQIE EGQQQQQLEG LSPKSSSDGS GSERKEYPID PSLPDIKNGI YGTDEFRMYT  240
FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCP KGDACEYAHG  300
IFECWLHPAQ YRTRLCKDET NCARRVCFFA HKPEELRPLY ASTGSAVPSP RSYSSSGPSF  360
DMASLSPLAL GSPPVMMPST STPPMTPTGA SSPIGGAAAW QNHLNITPPP ALQLPGSRLK  420
AALSARDMDM ESGLRRQQLL DELSGLSLSS PSNWNGEMGR LGGFSLSSPT GVQMRQNMNQ  480
QLLSSYSSGM PSSPVRGSSF GIEPSGSPVS NPRLAAFAKR SQSFVERNAV NRLSGGLSSP  540
ASNASVMPSH LSDWGSPDGK VDWGVQGDEL NKLRKSASFA YRSNGSNTAG NTNSIRAAGD  600
EPDVSWVHSL VKDAPPGSSN QLGFEEQLRD QYHLNSGLSE RIPPWVEQLY MEQEPMAA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein