PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001491-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 607aa MW: 66346.5 Da PI: 6.4699

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001491-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.6e-09	493	541	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lvd+v+++G g+W+ I r +Rt ++k++w+++l AUR62001491-RA 493 AWSLTEVTKLVDGVAMFGAGRWSEIKRLSFssyAHRTSVDLKDKWRNLL 541 7*************************999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MKMVVGIKEN EEGVIEDGAA VKLSSGLAPL KQEADPIVYK LVRVDFDGSF VPATDDELME 60 VEDLLELEKS DMLSIPDAVE TVAHIADKDE LDESFEKPDL EKHEGLSEIK LTKVDEENFR 120 AQAEDSLPKS ASSSKDRLVE ESVNNGEESS SSPNDGLNKN GSSGSKPNFS LVKGEIDLDK 180 LTTKELHETF RATFGRRTSV KDKMWLKRRI AMGLTNSCDV TVTSFIIKDG KLMKKEELGN 240 NLDRGNTVAG EVCSAGNSEP VNLVAPNVRE DTLEVELGNS FTESGCRSDD HLDHRAAKRA 300 RKPTKRYIEE SSDTKKDFGG KSTSPAKHFG QDKASCKEAV KPAWGVHSGD FITRPDSIGG 360 SGVQVPYVSR IRRCRPRKSI MALTKFNSSD IALNKKIVDS SAAVGKPQPD DHSRAKLVET 420 KLIPFEEPIA SEEERDKSCL ISMSDTISQA REPKSVDSVD STQLENVSGN NSDDHVATVP 480 TVKGGMRRKH HRAWSLTEVT KLVDGVAMFG AGRWSEIKRL SFSSYAHRTS VDLKDKWRNL 540 LKASFANSQA DKGVNPRKNA PLPIPATILV KVRELAELNG QAPHVLKAGS NKNSGSSVNE 600 NKSGYL*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MKMVVGIKEN EEGVIEDGAA VKLSSGLAPL KQEADPIVYK LVRVDFDGSF VPATDDELME  60
VEDLLELEKS DMLSIPDAVE TVAHIADKDE LDESFEKPDL EKHEGLSEIK LTKVDEENFR  120
AQAEDSLPKS ASSSKDRLVE ESVNNGEESS SSPNDGLNKN GSSGSKPNFS LVKGEIDLDK  180
LTTKELHETF RATFGRRTSV KDKMWLKRRI AMGLTNSCDV TVTSFIIKDG KLMKKEELGN  240
NLDRGNTVAG EVCSAGNSEP VNLVAPNVRE DTLEVELGNS FTESGCRSDD HLDHRAAKRA  300
RKPTKRYIEE SSDTKKDFGG KSTSPAKHFG QDKASCKEAV KPAWGVHSGD FITRPDSIGG  360
SGVQVPYVSR IRRCRPRKSI MALTKFNSSD IALNKKIVDS SAAVGKPQPD DHSRAKLVET  420
KLIPFEEPIA SEEERDKSCL ISMSDTISQA REPKSVDSVD STQLENVSGN NSDDHVATVP  480
TVKGGMRRKH HRAWSLTEVT KLVDGVAMFG AGRWSEIKRL SFSSYAHRTS VDLKDKWRNL  540
LKASFANSQA DKGVNPRKNA PLPIPATILV KVRELAELNG QAPHVLKAGS NKNSGSSVNE  600
NKSGYL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	378	RRCRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	4e-82	MYB_related family protein