PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62001440-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 520aa    MW: 59220 Da    PI: 9.4229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62001440-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06490511426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      lCr++ r G C yG rCkF H+
  AUR62001440-RA 490 QLCRHYPR-GKCYYGTRCKFLHV 511
                     69******.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MVLQMAKSLY EAQNAIDFTD LEDSDYNEFG SDDSEEDPSY IDDLDKFQSN LSINSKSISS  60
DRDYAETQLD DEEVSDTKEL SAPKLGIKDM KDLDEIQRVI DSGLVEKLKV EQCKVYLRKH  120
GLRLTGKKDT LVQRIKEHSE IMNGGGEKKF PPSSFVLNCK GDACMGDIVM FEQTVYEGYS  180
IVSRSATGPP CGKRIVAGRI VKESYGAAKQ QHTFTVEVLW SKGHKPLPPL HPLLIKGRNL  240
YRLNTLRQRW EDESERQQIL SEKHCRGSLA RSNREARIQE KVSKKMLKGA RICPKERQHL  300
RQEKNHRLAT GQISNYDSKN VGSKAQKQHT VAKKIQQQQQ TNKDENLKVP VEYKENSYVG  360
LPISQPSRQI KPNIPASDTY VKPTSRLCLG YIDLNSSLSH IAPAKFQQIL HPQHLHHSVQ  420
TVLKPQPLQQ KTSSTSTCHF YQKLSSCFID NGNFITSASS LLHPQNQLLV SNRTSLHSSY  480
GRNHQKEPQQ LCRHYPRGKC YYGTRCKFLH VSNRNYDKF*