PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62001352-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 114aa MW: 13233.7 Da PI: 4.7146 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 47.7 | 4.3e-15 | 2 | 56 | 44 | 98 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 + +++lpee+r++a++slv eA+ r+rdPvyG+vg+i++l+qq+++++ ela+++ AUR62001352-RA 2 NKMQQLPEERRSEAAESLVLEARSRVRDPVYGSVGTITQLRQQIMEAEYELAKTQ 56 6799***********************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence |
MNKMQQLPEE RRSEAAESLV LEARSRVRDP VYGSVGTITQ LRQQIMEAEY ELAKTQGLIA 60 LSYAQHLHEQ QQIFEAENKP LIHQNQDTWH FDHSLLLNDL NQQQQSEDYI TWG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 4e-18 | LBD family protein |