PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000986-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 472aa MW: 52114 Da PI: 6.9145

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000986-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	46	61	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tGtCk+G +C+F+H+p AUR62000986-RA 46 TGTCKFGQNCRFNHPP 61 8*************97 PP
2	zf-CCCH	27.7	4.6e-09	84	105	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+ G CkyGd C+++H+ AUR62000986-RA 84 DCKYFRTPGGCKYGDACRYNHS 105 7********************7 PP
3	zf-CCCH	34.6	3.2e-11	128	150	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++rtG C yG++C+F+H+ AUR62000986-RA 128 QECTFYLRTGSCGYGANCRFHHP 150 68********************9 PP
4	zf-CCCH	34.4	3.8e-11	272	297	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++tG Cky + C+++H+ AUR62000986-RA 272 PGQPDCDFFMKTGDCKYRAACRYNHP 297 5789*********************8 PP
5	zf-CCCH	25.9	1.8e-08	352	378	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ + C+++H++ AUR62000986-RA 352 PGQPECEFFMKTGNCKFKSACRYHHPR 378 5789*********************96 PP
6	zf-CCCH	27.2	6.6e-09	400	423	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + Cr++ GtCkyG +C F+H+ AUR62000986-RA 400 SKVCRNYELQGTCKYGRNCLFHHP 423 678********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MGTCEEISSS IEIQNEIKLG ISPTGTHWDE QVTEEELLAQ QFEGVTGTCK FGQNCRFNHP 60 PEKGFKEKGI EENNGTFVDP GKIDCKYFRT PGGCKYGDAC RYNHSAQKVE NEGPELNFLG 120 LPVRPSEQEC TFYLRTGSCG YGANCRFHHP DPIASKESEA RSSLGNGVYA RGSNNFSGMY 180 VGDPLQTSGV ARGIPDLANG LSSMNGLPYA GMSSYHQALP QNARWNQDQV NLSLSAKKTP 240 LPHQIVNNLS KKADPTTHYE HLLQSEEFPL RPGQPDCDFF MKTGDCKYRA ACRYNHPISQ 300 DSKLRLPLLS SKGLYSKSKN PELPNLNPGN PRKNGTSHQQ QQMQNGQYPE RPGQPECEFF 360 MKTGNCKFKS ACRYHHPRDR MSTSSPCALN ESGLPLRPGS KVCRNYELQG TCKYGRNCLF 420 HHPDNSSPAI SVAPVPPVDQ DHSSPNPEVA TNLESPAGDN VESDWGDGWV M*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MGTCEEISSS IEIQNEIKLG ISPTGTHWDE QVTEEELLAQ QFEGVTGTCK FGQNCRFNHP  60
PEKGFKEKGI EENNGTFVDP GKIDCKYFRT PGGCKYGDAC RYNHSAQKVE NEGPELNFLG  120
LPVRPSEQEC TFYLRTGSCG YGANCRFHHP DPIASKESEA RSSLGNGVYA RGSNNFSGMY  180
VGDPLQTSGV ARGIPDLANG LSSMNGLPYA GMSSYHQALP QNARWNQDQV NLSLSAKKTP  240
LPHQIVNNLS KKADPTTHYE HLLQSEEFPL RPGQPDCDFF MKTGDCKYRA ACRYNHPISQ  300
DSKLRLPLLS SKGLYSKSKN PELPNLNPGN PRKNGTSHQQ QQMQNGQYPE RPGQPECEFF  360
MKTGNCKFKS ACRYHHPRDR MSTSSPCALN ESGLPLRPGS KVCRNYELQG TCKYGRNCLF  420
HHPDNSSPAI SVAPVPPVDQ DHSSPNPEVA TNLESPAGDN VESDWGDGWV M*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-58	C3H family protein