PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62000893-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family NF-YC
Protein Properties Length: 210aa    MW: 23119.1 Da    PI: 5.246
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62000893-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC172.93.5e-54311323101
           NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                     +sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+filel+lrsw+h+eenkrrtl+k+diaaa+trtdifdflvd
  AUR62000893-RA  31 QSFWQNQyqdIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELSLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 125
                     79****9999************************************************************************************* PP

           NF-YC  95 ivprdel 101
                     ivpr++l
  AUR62000893-RA 126 IVPREDL 132
                     ****987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MDQQGHGQAP AVGTVSGAGQ VPYGSAYQPN QSFWQNQYQD IEKVTDFKNH SLPLARIKKI  60
MKADEDVRMI SAEAPVVFAR ACEMFILELS LRSWNHTEEN KRRTLQKNDI AAAITRTDIF  120
DFLVDIVPRE DLKDDVLATL PRGTGMPVAG PADALPYYYM PPAQNPAQAG PPGVMMGNPN  180
AYAAQSQPYM GQPMWPQQPP QRQQSSSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.35e-75NF-YC family protein