PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62000893-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | NF-YC | ||||||||
Protein Properties | Length: 210aa MW: 23119.1 Da PI: 5.246 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172.9 | 3.5e-54 | 31 | 132 | 3 | 101 |
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 +sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+filel+lrsw+h+eenkrrtl+k+diaaa+trtdifdflvd AUR62000893-RA 31 QSFWQNQyqdIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELSLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 125 79****9999************************************************************************************* PP NF-YC 95 ivprdel 101 ivpr++l AUR62000893-RA 126 IVPREDL 132 ****987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MDQQGHGQAP AVGTVSGAGQ VPYGSAYQPN QSFWQNQYQD IEKVTDFKNH SLPLARIKKI 60 MKADEDVRMI SAEAPVVFAR ACEMFILELS LRSWNHTEEN KRRTLQKNDI AAAITRTDIF 120 DFLVDIVPRE DLKDDVLATL PRGTGMPVAG PADALPYYYM PPAQNPAQAG PPGVMMGNPN 180 AYAAQSQPYM GQPMWPQQPP QRQQSSSDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 5e-75 | NF-YC family protein |